BAC Information

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BAC

Clone NameMSMg01-445N12
Chromosome13 (Build37)
Map Location 10,557,114 - 10,557,509
singlet/doubletsinglet
Overlap genenone
Upstream geneDip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
Downstream geneLOC100039648
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N12.T7 (MSMg01no445_n12.b1)MSMg01-445N12.TJ (MSMg01no445_n12.g1)
ACCAG534678AG534679
length756744
length of high quality
(start - end)
422 (42 - 463)486 (71 - 556)
definitionCHROMAT_FILE: MSMg01no445_n12.b1 PHD_FILE: MSMg01no445_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:12 2005CHROMAT_FILE: MSMg01no445_n12.g1 PHD_FILE: MSMg01no445_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CTTTGTTCCGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCCTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTGTT
CAGGAATCTTTTTTTTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCTCTGGAAGGGTTTAACTCCCTTTGTCGAAGATTCAGTGTAC
CTAAGCGGGGGGGTCTTTTTCCGGGGACTTTTATACCAATTCATTTGGCA
ACTTAGTTTGTCCTTTCTACTTAGATAATTTTACGTTTTTTTCTTTTTTC
TCTGAAACTCATATTTCTTTTCTGCTATTTTGATTTCTTCATCCATTGTG
TTCTCCTCCGCCCCATTATTTATTGCTCTGCCCCCACTATTAGCTGTTTC
TTAAGC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCTGTGGACTTTCCCTTGACTCTTTTTC
TATGTGAATACTCAACCAGGGTTCTAACCAGCTTGCCAGGACTACAATAT
CTCCACCCCAACCCCCAGGCACCAAACTTATGAAGAAAATAAAATAGTTA
ATTTTATGAAGAAATTAGTCTTAGGTATTCTGCTATAGAAAGGCAAAATG
AACACACATAAATAAAATATTAAAATATATCCAAGCTTATTATTGTCTGT
TAAGAGAAGATTTGGCAAATATTTTAAAATTCCTTTTGCCTTTAATGTCT
CTGCTTCTTTTCATGAGCACGTGAAGGGAATAAAAGCTATACTATCAATG
AAATAAAGTGCAGCATGCATGGGAGGGACACCTGAGGAATAAATGATTTC
TAAATACCGAATTTATAAAGTGACAACTTCGTTACAACTCTGAAGAACCA
TTTTAGGACAGAACACTACAACATTCATATAAAATATTTGCCTATAGCAA
TAAACAAGGTAAAAATAAAAATTTTATAAGTGGGGACCTAAGTTAAATGT
TCCTGAACTAATCTTAGGAAATGTCCGAGAGATAAACCCAAACCAGAGGA
GAGGGGAGGAAAAGCCCCCCCAGGGCTCCCAGCCACTGCAGTTGTTTTTG
GTCTTTGCTCCACCCCCCTATAAATTAAAAAAACAACCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n12.g1 MSMg01no445_n12.g1 CHROMAT_FILE:
MSMg01no445_n12.g1 PHD_FILE: MSMg01no445_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:12 2005
         (486 letters)



>mm_chr13_10556914_10557799
          Length = 886

 Score =  719 bits (372), Expect = 0.0
 Identities = 390/396 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctgtggactttcccttgactctttttctatgtgaatactcaaccagggttctaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcctgtggactttcccttgactctttttctatgtgaatactcaaccagggttctaacca 260

                                                                       
Query: 61  gcttgccaggactacaatatctccaccccaacccccaggcaccaaacttatgaagaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgccaggactacaatatctccaccccaacccccaggcaccaaacttatgaagaaaat 320

                                                                       
Query: 121 aaaatagttaattttatgaagaaattagtcttaggtattctgctatagaaaggcaaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatagttaattttatgaagaaattagtcttaggtattctgctatagaaaggcaaaatg 380

                                                                       
Query: 181 aacacacataaataaaatattaaaatatatccaagcttattattgtctgttaagagaaga 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 aacacacataaataaaatattaaaatatatccaagcttattaatgtctgttaagagaaga 440

                                                                       
Query: 241 tttggcaaatattttaaaattccttttgcctttaatgtctctgcttcttttcatgagcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggcaaatattttaaaattccttttgcctttaatgtctctgcttcttttcatgagcac 500

                                                                       
Query: 301 gtgaagggaataaaagctatactatcaatgaaataaagtgcagcatgcatgggagggaca 360
            |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 501 atgaaggaaataaacgctatactaccaatgaaataaaatgcagcatgcatgggagggaca 560

                                               
Query: 361 cctgaggaataaatgatttctaaataccgaatttat 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgaggaataaatgatttctaaataccgaatttat 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)