BAC Information

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BAC

Clone NameMSMg01-445N15
Chromosome13 (Build37)
Map Location 53,800,136 - 53,800,626
singlet/doubletsinglet
Overlap genenone
Upstream geneAuh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
Downstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445N15.T7 (MSMg01no445_n15.b1)MSMg01-445N15.TJ (MSMg01no445_n15.g1)
ACCAG534684AG534685
length743733
length of high quality
(start - end)
491 (63 - 553)507 (69 - 575)
definitionCHROMAT_FILE: MSMg01no445_n15.b1 PHD_FILE: MSMg01no445_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:12 2005CHROMAT_FILE: MSMg01no445_n15.g1 PHD_FILE: MSMg01no445_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
ATTGACTCTAAGAGAAGGTGGAGTTTGGTTGCTAGAAATGTGATTGGGGT
GGTTCCCTATTTTGATTGACAGGCTTGCTCAATGCACACGTCCCTCCCCA
CAAAGCATCGGAAATGTCCTGCCGGGTGTCTCTCAAACTGCAGTTAAAGT
ATCTCTGTAAATGGGAAGGGACCACCACTGAAGGAACACATGAAAGAAGA
ATTTAGTTTCTCCTGCGCTGGTTATATTTACAAGGAAAACTCCGATTTCT
TCTGTATTTTATAAAATTATTAATGGGAAAAGCAGATTTTATTCACTCAC
TGTGGCTTTGCCCTGTGAGACAGGCTCAGCAATGTCCCTAACGTGCCTAT
GCCTCGGTCTCTGGAGTCTGTGAAACATTATCTGATTAGTAAAAAGATGC
TGTAGATTTGCTAACGTTCAGTATGCACAGAAGAAGACTGCCCCGATAAC
CTGGGGGGACTCCAGAAATAACTCACTAGTATCTTCCTGGGAGGGGGAAG
GTGTGAGATTTGCTATATTACATTTATTTTTACCACTTTGTTCTATCACT
CAACTTCCTTTACTCTTTTAATTTAGACATTTTTTTTTTTCCACTTTCTC
CTTTCATCATTTATCTTCTACCACTCTTTTCCTTTCAATTCACTTTTTTC
TTTTCTACCATTTTTTTCTCACCTTATTTTACTCCTATCTAAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTAACCTAGATTAATGACTGGACAGGCAAGA
CACGCCCACTAGTGCTACAATGATCCAACTGTTCTAGAAGTAACCAACCA
CTTTCTGATTCGATTTAAAGCCCATTCCAGAAGACAGAACTATTGCTTGC
TATAACTAATTGGTCCAAAACCCCATGACTGTCTATGGGATAAGCTCCAA
GGAAGAGCCCAATACTATTATTTGCTAAATAGTGATAATAAATTGTTCCC
TACGTTCTTATCTTTATACCCATATGCATCTCTTAAGCCTCCGGAAGGCT
TCTTGTAGTGGATGGTGATTAATACAGACTTCGAGTTGGTCATTGGGCAG
AAGTAAGAGAATGTGGATTGCTCAGTTCTAAATGGGCAACATGTATCACA
CGCACCCCACCCCCTGCCCTAAGGCTCAGACATCACTGTGGAAGAAGGGC
TGAAAAGATCACAGGAGCCAGAGGTAGTGGATATCTGCAGTGATACAGTA
TTTGCTGGATATGACACAGTGCCGTTAGTCACACACATGGCCTTGGAGCA
CCTGTGATGGCCATCTCCATAATCTCGACAGATGACAGTTCTTAAAGAGA
AGGGAAATTTCCTACAACCCCAGTTTCTTTTGCCCGGGGGAAAAAGCCAA
GGAGATGTATATTCCTTGGAAGCATAGCCAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_n15.b1 MSMg01no445_n15.b1 CHROMAT_FILE:
MSMg01no445_n15.b1 PHD_FILE: MSMg01no445_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:12 2005
         (491 letters)



>mm_chr13_53799936_53800826
          Length = 891

 Score =  888 bits (459), Expect = 0.0
 Identities = 483/491 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaggtggagtttggttgctagaaatgtgattggggtggttccctattttgattgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agaaggtggagtttggttgctagaaatgtgattggggtggttccctattttgattgacag 632

                                                                       
Query: 61  gcttgctcaatgcacacgtccctccccacaaagcatcggaaatgtcctgccgggtgtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gcttgctcaatgcacacgtccctccccacaaagcatcggaaatgtcctgccgggtgtctc 572

                                                                       
Query: 121 tcaaactgcagttaaagtatctctgtaaatgggaagggaccaccactgaaggaacacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 571 tcaaactgcagttaaagtatctctgtaaatgggaagggaccaccactgaaggaacacata 512

                                                                       
Query: 181 aaagaagaatttagtttctcctgcgctggttatatttacaaggaaaactccgatttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaagaagaatttagtttctcctgcgctggttatatttacaaggaaaactccgatttcttc 452

                                                                       
Query: 241 tgtattttataaaattattaatgggaaaagcagattttattcactcactgtggctttgcc 300
           ||||  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 451 tgtaacttaaaaaattattaatgggaaaagcagattttattcactgactgtggctttgcc 392

                                                                       
Query: 301 ctgtgagacaggctcagcaatgtccctaacgtgcctatgcctcggtctctggagtctgtg 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 391 ctgtgagacaggctcagcaatgtccctaacgtgcatatgcctcggtctctggagtctgtg 332

                                                                       
Query: 361 aaacattatctgattagtaaaaagatgctgtagatttgctaacgttcagtatgcacagaa 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 331 aaacattatctgattagtaaaaagatgttgtagatttgctaacgttcagtatgcacagaa 272

                                                                       
Query: 421 gaagactgccccgataacctggggggactccagaaataactcactagtatcttcctggga 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 271 gaagactgccccgataacctggggggaccccagaaataactcactagtatcttcctggga 212

                      
Query: 481 gggggaaggtg 491
           |||||||||||
Sbjct: 211 gggggaaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)