BAC Information

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BAC

Clone NameMSMg01-449B04
Chromosome13 (Build37)
Map Location 63,283,408 - 63,417,660
singlet/doubletdoublet
Overlap gene2010111I01Rik, Fancc
Upstream geneLOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449B04.T7 (MSMg01no449_b04.b1)MSMg01-449B04.TJ (MSMg01no449_b04.g1)
ACCAG537134AG537135
length745754
length of high quality
(start - end)		580 (53 - 632)249 (81 - 329)
definitionCHROMAT_FILE: MSMg01no449_b04.b1 PHD_FILE: MSMg01no449_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:34 2005CHROMAT_FILE: MSMg01no449_b04.g1 PHD_FILE: MSMg01no449_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,417,085 - 63,417,660)(63,283,408 - 63,283,656)
sequence
NNNNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTATGACTGACAGCAATGCTGAACCATCTAGTGAAAGA
TGGGTGAAAGGATAGGTCAGACACTTCTCCAGAAGCTGAGTGAATGCTCA
GAGCACCTGAGAAGAGACCCATAGCACGGTAGTTTCCAGATCACACACCT
AGATGCTGGCTCCTGCAGAACTAGTAGAGCAACATTGAGAATCAGGGTGG
CATCGTGAGGCCTTTCCACGGGGAATGCTACAGTGATGCAGCCACTGTGA
AGGAAGTAGTCTCACTCTACTGTGGGACATAGTGATCCTGTCCCCAGGTC
ACCCCGAGAACCTGATGGCAGAGGCTAAAACAGGCATGTGTCTTAGGATC
TGTGCTGTTGACAGCAGCAAGGAGTGCATGCCTGGATAAGCACGGGTGCT
TGTGCACACAACCATGCATTACCCTTTGTCCTTGGAAAGGAAGGCACTTT
TGCCACCTGTTACAACATGGGTGAACCGTGAAAGCTTTGTGCTATGTGAA
ATCAACTCGCTGCAAGGAAATCTGTGAGAGTCATCTGGACTAGCCTGATT
CTCAGAAGTAGAACAGGGGCTTCCCAGGGCTGGGAATGGGTGGATGGGCA
GTGTCTGGAGATAGGTGCGGTAATGGGTGGAAAGTGTTGGTAATGTAGGT
GGTATAAGAATCCAGCACTTGAGATGCAGTATGAGCATCAGAATN

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCGAAAATCTTGTCTTGGAGTTAGTAAT
GCTTTAATAGGCTAAGATACAGGGAGCTGGGCTGCCCAGGCCCCATACGG
TGGCCATGTGTGTCTATTTCCTAGTGTCTGGACTGGAGTTTTGGCATATA
CCTTTAGGACCAATGAAATAGCTGATGACACATAGCTTCCAGGCAGCTGT
GCAAAGAAAGATAAAAACGCAAAATGAGAATAGGGACCAGCACTGCCTAA
GCATGCTGGCCTCTGGCCGAGATCTGTCCATTTTTTTAGTCCCAGCCTTG
CTGCCTGAAGACTTTCCTCCCTCTATGCTCATCAATAAGTTGCTAACACT
GAAACAACTTAAGTGTCCTCTTANAGGCTTAGATAAAGAGAATATGGTAG
ATCCATGAAATAAACCATTAACTTACAATAAGAATGAGGGTTGTCACCTG
CTTGAGCATGTCATGTGAACCTTTAATACAGTGTACCTTAGGAAAGGAAC
CAGACACAGAAGCCTACATGCTTATGAGTTCACTTCTCTGAATCATCTAA
GCAAATCTGTAGAGACACACAGACTAATGATATCAAAGGTTGCCGTATTG
AATAGGGATTGTCCATGCTTATGGTGTTTCTGCAGTGTTAAAGAATGTTC
TGAAAGTAGTACTCATGATAGGTACCCTGCCTTATGAACACCGTACAATT
TATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_b04.b1 MSMg01no449_b04.b1 CHROMAT_FILE:
MSMg01no449_b04.b1 PHD_FILE: MSMg01no449_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:34 2005
         (580 letters)



>mm_chr13_63417058_63418037
          Length = 980

 Score = 1098 bits (568), Expect = 0.0
 Identities = 574/576 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatgactgacagcaatgctgaaccatctagtgaaagatgggtgaaaggatagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaattcttatgactgacagcaatgctgaaccatctagtgaaagatgggtgaaaggatagg 544

                                                                       
Query: 65  tcagacacttctccagaagctgagtgaatgctcagagcacctgagaagagacccatagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcagacacttctccagaagctgagtgaatgctcagagcacctgagaagagacccatagca 484

                                                                       
Query: 125 cggtagtttccagatcacacacctagatgctggctcctgcagaactagtagagcaacatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cggtagtttccagatcacacacctagatgctggctcctgcagaactagtagagcaacatt 424

                                                                       
Query: 185 gagaatcagggtggcatcgtgaggcctttccacggggaatgctacagtgatgcagccact 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gagagtcagggtggcatcgtgaggcctttccacggggaatgctacagtgatgcagccact 364

                                                                       
Query: 245 gtgaaggaagtagtctcactctactgtgggacatagtgatcctgtccccaggtcaccccg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgaaggaagtagtctcactctactgtgggacatagtgatcctgtccccaggtcaccccg 304

                                                                       
Query: 305 agaacctgatggcagaggctaaaacaggcatgtgtcttaggatctgtgctgttgacagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agaacctgatggcagaggctaaaacaggcatgtgtcttaggatctgtgctgttgacagca 244

                                                                       
Query: 365 gcaaggagtgcatgcctggataagcacgggtgcttgtgcacacaaccatgcattaccctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcaaggagtgcatgcctggataagcacgggtgcttgtgcacacaaccatgcattaccctt 184

                                                                       
Query: 425 tgtccttggaaaggaaggcacttttgccacctgttacaacatgggtgaaccgtgaaagct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgtccttggaaaggaaggcacttttgccacctgttacaacatgggtgaaccgtgaaagct 124

                                                                       
Query: 485 ttgtgctatgtgaaatcaactcgctgcaaggaaatctgtgagagtcatctggactagcct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttgtgctatgtgaaatcaactcgctgcaaggaaatctgtgagagtcatctggactagcct 64

                                               
Query: 545 gattctcagaagtagaacaggggcttcccagggctg 580
           |||||||||||||||||||| |||||||||||||||
Sbjct: 63  gattctcagaagtagaacagaggcttcccagggctg 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_b04.g1 MSMg01no449_b04.g1 CHROMAT_FILE:
MSMg01no449_b04.g1 PHD_FILE: MSMg01no449_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:34 2005
         (249 letters)



>mm_chr13_63283208_63283856
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtcttggagttagtaatgctttaataggctaagatacagggagctgggctgcccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtcttggagttagtaatgctttaataggctaagatacagggagctgggctgcccagg 260

                                                                       
Query: 61  ccccatacggtggccatgtgtgtctatttcctagtgtctggactggagttttggcatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccatacggtggccatgtgtgtctatttcctagtgtctggactggagttttggcatata 320

                                                                       
Query: 121 cctttaggaccaatgaaatagctgatgacacatagcttccaggcagctgtgcaaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttaggaccaatgaaatagctgatgacacatagcttccaggcagctgtgcaaagaaag 380

                                                                       
Query: 181 ataaaaacgcaaaatgagaatagggaccagcactgcctaagcatgctggcctctggccga 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaaatgcaaaatgagaatagggaccagcactgcctaagcatgctggcctctggccga 440

                    
Query: 241 gatctgtcc 249
           || ||||||
Sbjct: 441 gacctgtcc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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