MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-449F24
Chromosome	13 (Build37)
Map Location	60,209,980 - 60,210,224
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ntrk2, LOC100041533, Agtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Downstream gene	LOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ntrk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18212 MGI:97384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100041533 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041533
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Agtpbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67269 MGI:2159437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Mak10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78689 MGI:1925939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Golph2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105348 MGI:1917329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	4921517D22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70900 MGI:1918150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700013B16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72219 MGI:1919469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG238662 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238662 MGI:3646080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein

name	4932411G14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238663 MGI:3045260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Isca1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69046 MGI:1916296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zcchc6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214290 MGI:2387179
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041267 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins

name	Gas1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14451 MGI:95655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG328264 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328264 MGI:3647835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dapk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69635 MGI:1916885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC218274 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:218274
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins pseudo : _no_value

name	BC051665 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218275 MGI:2682300
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310051M13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70202 MGI:1917452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930486L24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214639 MGI:1922258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpbpb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:116913 MGI:2151721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctla2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13024 MGI:88554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpbpa (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21984 MGI:98795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctsj (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26898 MGI:1349426
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctsq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104002 MGI:2137385
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ntrk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68215969 GeneID:18212 MGI:97384
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurotrophic tyrosine kinase, receptor, type 2 transcript_id : NM_001025074.1

name	LOC100041533 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264268 GeneID:100041533
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041533 transcript_id : XM_001477019.1

name	Agtpbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158694 GeneID:67269 MGI:2159437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP/GTP binding protein 1 transcript_id : NM_023328.2

name	Agtpbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158682 GeneID:67269 MGI:2159437
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATP/GTP binding protein 1 transcript_id : NM_001048008.1

name	Mak10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21644570 GeneID:78689 MGI:1925939
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MAK10 homolog, amino-acid N-acetyltransferase subunit, (S. cerevisiae) transcript_id : NM_030153.1

name	Golph2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:93141216 GeneID:105348 MGI:1917329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi phosphoprotein 2 transcript_id : NM_001035122.2

name	Golph2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:93141215 GeneID:105348 MGI:1917329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi phosphoprotein 2 transcript_id : NM_027307.4

name	4921517D22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110347499 GeneID:70900 MGI:1918150
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4921517D22 gene transcript_id : NM_183290.2

name	1700013B16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140970995 GeneID:72219 MGI:1919469
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700013B16 gene transcript_id : NM_028157.2

name	EG238662 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395158 GeneID:238662 MGI:3646080
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 1 Protein product : predicted gene, EG238662 transcript_id : XM_138646.6

name	4932411G14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140970504 GeneID:238663 MGI:3045260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932411G14 gene transcript_id : NM_177711.3

name	Isca1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142360364 GeneID:69046 MGI:1916296
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : iron-sulfur cluster assembly 1 homolog (S. cerevisiae) transcript_id : NM_026921.3

name	Zcchc6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059475 GeneID:214290 MGI:2387179
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 6 transcript_id : NM_153538.2

name	LOC100041267 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264252 GeneID:100041267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins product : hypothetical protein LOC100041267 transcript_id : XM_001476070.1

name	Gas1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679940 GeneID:14451 MGI:95655
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : growth arrest specific 1 transcript_id : NM_008086.1

name	EG328264 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373360 GeneID:328264 MGI:3647835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG328264 transcript_id : NM_177810.3

name	Dapk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205417 GeneID:69635 MGI:1916885
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : death associated protein kinase 1 transcript_id : NM_029653.2

name	Dapk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114205407 GeneID:69635 MGI:1916885
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : death associated protein kinase 1 transcript_id : NM_134062.1

name	BC051665 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40255290 GeneID:218275 MGI:2682300
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC051665 transcript_id : NM_199148.1

name	2310051M13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367151 GeneID:70202 MGI:1917452
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310051M13 gene transcript_id : NM_027344.3

name	4930486L24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342510 GeneID:214639 MGI:1922258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930486L24 gene transcript_id : NM_178098.2

name	Tpbpb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345208 GeneID:116913 MGI:2151721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trophoblast specific protein beta transcript_id : NM_026429.2

name	Ctla2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6681076 GeneID:13024 MGI:88554
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytotoxic T lymphocyte-associated protein 2 alpha transcript_id : NM_007796.1

name	Tpbpa (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386437 GeneID:21984 MGI:98795
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trophoblast specific protein alpha transcript_id : NM_009411.3

name	Ctsj (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7770061 GeneID:26898 MGI:1349426
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cathepsin J transcript_id : NM_012007.1

name	Ctsq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892435 GeneID:104002 MGI:2137385
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cathepsin Q transcript_id : NM_029636.3

name	Ntrk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68215970 CCDS:CCDS26573.1 GeneID:18212 MGI:97384
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004714 - transmembrane receptor protein tyrosine kinase activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007631 - feeding behavior [Evidence IMP]; GO:0042490 - mechanoreceptor differentiation [Evidence IMP]; GO:0007399 - nervous system development [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0019222 - regulation of metabolism [Evidence IMP]; GO:0046548 - retinal rod cell development [Evidence IMP]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence IEA]; GO:0001570 - vasculogenesis [Evidence IMP] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : neurotrophic tyrosine kinase, receptor, type 2 isoform a protein_id : NP_001020245.1

name	LOC100041533 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264269 GeneID:100041533
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477069.1

name	Agtpbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114158695 GeneID:67269 MGI:2159437
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; Purkinje cell degeneration; nuclear ATP/GTP-binding protein product : ATP/GTP binding protein 1 isoform 1 protein_id : NP_075817.2

name	Agtpbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114158683 GeneID:67269 MGI:2159437
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; Purkinje cell degeneration; nuclear ATP/GTP-binding protein product : ATP/GTP binding protein 1 isoform 2 protein_id : NP_001041473.1

name	Mak10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21644571 CCDS:CCDS26575.1 GeneID:78689 MGI:1925939
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : embryonic growth-associated product : MAK10 homolog, amino-acid N-acetyltransferase subunit protein_id : NP_084429.1

name	Golph2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78190500 CCDS:CCDS26576.1 GeneID:105348 MGI:1917329
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : golgi phosphoprotein 2 protein_id : NP_001030294.1

name	Golph2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78190502 CCDS:CCDS26576.1 GeneID:105348 MGI:1917329
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : golgi phosphoprotein 2 protein_id : NP_081583.3

name	4921517D22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34304099 GeneID:70900 MGI:1918150
definition	codon_start : 1 product : hypothetical protein LOC70900 protein_id : NP_899113.1

name	1700013B16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140970996 GeneID:72219 MGI:1919469
definition	codon_start : 1 product : hypothetical protein LOC72219 protein_id : NP_082433.2

name	EG238662 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395159 GeneID:238662 MGI:3646080
definition	codon_start : 1 product : hypothetical protein protein_id : XP_138646.6

name	4932411G14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140970505 GeneID:238663 MGI:3045260
definition	codon_start : 1 product : hypothetical protein LOC238663 protein_id : NP_808379.2

name	Isca1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312189 CCDS:CCDS26578.1 GeneID:69046 MGI:1916296
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : HESB like domain containing 2 protein_id : NP_081197.1

name	Zcchc6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059476 GeneID:214290 MGI:2387179
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : zinc finger, CCHC domain containing 6 protein_id : NP_705766.2

name	LOC100041267 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264253 GeneID:100041267
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476120.1

name	Gas1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679941 CCDS:CCDS26579.1 GeneID:14451 MGI:95655
definition	GO_component : GO:0046658 - anchored to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IDA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence TAS]; GO:0045749 - negative regulation of S phase of mitotic cell cycle [Evidence NAS]; GO:0012501 - programmed cell death [Evidence IDA] codon_start : 1 product : growth arrest specific 1 protein_id : NP_032112.1

name	EG328264 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244354 GeneID:328264 MGI:3647835
definition	codon_start : 1 product : hypothetical protein LOC328264 protein_id : NP_808478.1

name	Dapk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114205418 CCDS:CCDS26581.1 GeneID:69635 MGI:1916885
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA] [Evidence IEA]; GO:0004685 - calcium- and calmodulin-dependent protein kinase activity [Evidence IDA]; GO:0005516 - calmodulin binding [Evidence IEA] [Evidence IDA]; GO:0004684 - calmodulin-dependent protein kinase I activity [Evidence TAS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IMP]; GO:0006915 - apoptosis [Evidence IEA]; GO:0008624 - induction of apoptosis by extracellular signals [Evidence TAS]; GO:0043065 - positive regulation of apoptosis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] [Evidence IEA]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : death associated protein kinase 1 protein_id : NP_083929.2

name	Dapk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114205408 GeneID:69635 MGI:1916885
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA] [Evidence IEA]; GO:0004685 - calcium- and calmodulin-dependent protein kinase activity [Evidence IDA]; GO:0005516 - calmodulin binding [Evidence IEA] [Evidence IDA]; GO:0004684 - calmodulin-dependent protein kinase I activity [Evidence TAS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IMP]; GO:0006915 - apoptosis [Evidence IEA]; GO:0008624 - induction of apoptosis by extracellular signals [Evidence TAS]; GO:0043065 - positive regulation of apoptosis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA] [Evidence IEA]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : death associated protein kinase 1 protein_id : NP_598823.1

name	BC051665 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40255291 CCDS:CCDS26582.1 GeneID:218275 MGI:2682300
definition	GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cathepsin L-like product : hypothetical protein LOC218275 protein_id : NP_954599.1

name	2310051M13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625773 GeneID:70202 MGI:1917452
definition	GO_function : GO:0004217 - cathepsin L activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC70202 protein_id : NP_081620.2

name	4930486L24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017423 CCDS:CCDS26583.1 GeneID:214639 MGI:1922258
definition	codon_start : 1 product : testin protein_id : NP_835199.1

name	Tpbpb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385926 GeneID:116913 MGI:2151721
definition	codon_start : 1 product : trophoblast specific protein beta protein_id : NP_080705.1

name	Ctla2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681077 GeneID:13024 MGI:88554
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cytotoxic T lymphocyte-associated protein 2 alpha protein_id : NP_031822.1

name	Tpbpa (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560633 GeneID:21984 MGI:98795
definition	GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : clone 4311 product : trophoblast specific protein alpha protein_id : NP_033437.2

name	Ctsj (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7770062 GeneID:26898 MGI:1349426
definition	GO_component : GO:0005764 - lysosome [Evidence IEA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : cathepsin P; rat gene/Cathepsin L-related protein; Cat P product : cathepsin J protein_id : NP_036137.1

name	Ctsq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27532972 CCDS:CCDS26584.1 GeneID:104002 MGI:2137385
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] codon_start : 1 product : cathepsin Q protein_id : NP_083912.2

name	LOC218274 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:218274
definition	number : 1 pseudo : _no_value

clone name	MSMg01-504D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519G11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-294L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299M07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-409B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431N08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-172N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260C03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489J16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-232A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114I14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-275G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117C20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154M21
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-449F24.T7 (MSMg01no449_f24.b1)	MSMg01-449F24.TJ (MSMg01no449_f24.g1)
ACC	AG537363	AG537364
length	747	760
length of high quality (start - end)	574 (54 - 627)	249 (84 - 332)
definition	CHROMAT_FILE: MSMg01no449_f24.b1 PHD_FILE: MSMg01no449_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:59 2005	CHROMAT_FILE: MSMg01no449_f24.g1 PHD_FILE: MSMg01no449_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:59 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTTTACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXCGCGGAATTCATGCAGTTGTTTCCTTCTTAACAGTCTGCTTTACGGG AACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTC CTTGCGCCGGTGAAACTCCCGTCCCGAGTTTCCTCCCGGGTTTTTTCTTC CCGGATTTTTTCTCGTCCCGGGTTTCGGCACCAATTCTTATACGCGTTCT CACGCCCGGCCAGGAAGAACACAACAGACCAGAATCTTCTGCGGCAAAAC TTTATTGCTTACATCTTCAGGAGCTAGGAGCGCAAAACCCCAGCCCCAAA AGCGAAAGCCCCTTCAATTCTTACATCTTTAGGAGCCAGAGCTCCGGCGC GCCAAAGCGCAGAGCGCGCTCTATTGTTTACATCTTTAGGCAGCGAGCGA GCGCAGGGCGCGCAGAGCCAGAGAGATGCCAGCGAGAGAGAATGGCGGAA ACCCCGTCCCCTTTTTAGGAGAGTTATATTTTGCCTAGGACGCATCACTC CCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGAAAGGCAGA GTACAAGTAGTCCGTAAATACCCTTGGCACATGCGCAGATTATTTGTTTA CCACTTAGAACACAGGATGTCAGCGCCATCTTATGACGGCGAATGTGGGG GCGGCTCCCAACACTTCCCAGTGTGTCCAGTATAAGTGGCACGTGAN	TTTTNCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXTTCAGAAATTCTGGCCAATTGGGGTGAT TTAGGGATCCCCTAAAGAAGGAACCCTCTGAGGAACAGATGTTCCAAGCA GTCCTTCAAGACCAAAGCTGCATTTGAAGCCTCCCCAGGGTTGATGAGGG AACCTGACTAAAGGCCATGATTGCCAGGATGGGGATAGCATGGGACAGTC GGGGCTGGGAAATGCAACACTCAACCTAGTGGGGACTAAGGAGAGAGGAA CGGGGCCATCGCTGCATAAGACTATGGTAAGAGATTTTTTGCCTGAACCA GTCGGATTGGGTGAGCCCAGAAGACCACATAAACATATCTGCTACCCACT TAGCTCAAAGCATACATCCTCAAGCAATCTCTTCCCTCTTCAACATAGTT GGGAACAGGCTGAGTTATGCTGCAGTTACAAACGGTCTTGTAGATTCCCC TCAACCTGCACTTTCATTCTCCTTGTTTAGTTACCAGCAACCACAGCCAG TTCTACACTGTTCAGCTGAAGAATTCCATAAACCATTGGGAAGTCCTAAA TCATGTGATGAATCCGCGACTTTCCGGACCTGAGCCGCTCCTTTGTCCAG GTATAGGCTACCCCATCAGCACTTATTCTTCTTTGTTTAAAGGATCAGCT TCTCAAAGCCCCCAGGAGACTCTTTTTTAATTAAACTTGACCCCCCCAGC CACGAAAGAG
quality values	Open. Hide. 6 6 9 9 6 8 6 9 10 15 8 8 8 8 8 18 27 24 21 21 13 13 13 25 25 28 24 24 32 30 30 41 41 30 28 26 25 22 19 23 9 9 9 11 9 9 9 12 12 12 18 19 19 20 24 32 34 35 35 35 35 31 31 33 33 33 41 39 25 21 9 9 9 11 14 20 32 30 46 46 37 37 37 37 37 47 47 47 59 59 59 59 59 59 59 59 59 57 57 57 48 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 47 51 50 50 50 51 57 51 51 47 50 50 51 68 68 68 68 68 68 68 68 68 68 59 57 57 57 50 50 50 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 68 68 68 59 59 57 57 48 57 48 57 57 59 57 59 59 59 59 54 54 54 57 57 59 59 59 35 35 35 44 42 43 43 34 34 13 12 16 27 35 57 68 68 59 59 54 54 54 54 54 54 57 57 57 57 57 54 46 43 43 43 40 46 48 57 57 54 57 48 48 57 57 59 59 59 59 57 57 57 57 57 57 59 57 48 48 48 48 48 59 59 47 47 43 43 41 34 37 39 39 39 41 41 40 41 48 59 59 48 48 48 48 48 40 41 41 41 39 39 37 29 29 37 37 41 41 39 38 34 37 39 39 39 37 37 37 36 41 43 43 43 41 41 41 41 41 41 41 41 39 39 31 32 35 31 31 39 39 37 32 31 35 35 37 37 35 35 35 39 34 34 25 24 13 11 13 13 13 8 10 10 15 17 39 39 39 39 19 16 16 17 18 22 24 22 28 28 21 24 19 23 20 30 23 19 17 16 16 16 13 13 16 16 16 21 22 28 23 17 9 9 11 13 20 30 31 22 20 20 13 13 7 6 8 12 19 30 35 24 18 19 14 17 12 15 14 12 25 21 17 6 6 6 6 7 8 10 7 6 6 6 17 11 14 12 15 9 9 9 12 12 13 11 11 11 14 15 13 16 23 21 17 13 10 10 8 8 6 7 8 6 10 8 8 8 8 8 8 17 16 13 12 12 11 21 15 12 12 3 0	Open. Hide. 7 7 7 3 0 3 6 6 6 8 10 8 8 9 9 9 10 10 3 0 3 23 23 37 32 35 39 39 39 39 39 39 37 31 31 37 37 37 23 23 9 9 6 7 7 6 6 6 12 10 10 12 18 18 26 26 37 39 39 47 53 50 59 59 59 59 37 29 22 9 9 11 11 11 9 9 9 10 10 13 13 14 19 23 23 25 33 37 47 47 50 59 59 59 59 57 42 42 47 47 47 50 59 59 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 43 43 41 43 37 36 23 23 17 19 19 24 40 43 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 50 50 50 51 51 51 68 68 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 42 32 24 15 13 14 15 15 32 32 40 57 57 59 59 59 59 68 68 59 54 54 54 54 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 53 53 50 59 59 59 41 33 23 16 8 6 6 6 6 7 8 10 13 10 12 24 28 35 37 41 41 53 47 50 50 59 53 53 53 53 53 57 59 59 59 59 59 59 59 59 59 59 40 32 23 23 23 28 28 37 37 43 43 43 43 43 46 48 57 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 59 59 59 59 68 68 68 57 57 57 57 57 57 57 57 54 57 57 57 57 59 57 50 57 57 57 57 57 59 57 57 57 57 48 48 48 48 50 50 47 47 59 59 44 39 29 32 32 26 26 35 43 44 41 47 43 43 43 35 36 34 34 23 34 34 44 46 59 59 59 41 41 38 37 35 39 41 41 41 46 46 37 41 37 37 37 37 39 46 41 43 25 22 11 10 10 21 19 30 17 19 28 21 28 30 30 39 31 26 27 25 31 24 28 21 20 14 18 13 14 12 19 21 21 14 21 23 37 32 30 28 32 32 36 36 32 25 21 11 8 9 9 9 9 13 15 19 12 14 12 16 11 11 11 8 8 10 10 10 9 18 18 15 14 17 22 22 30 24 25 25 18 21 11 11 11 13 12 18 20 12 12 12 14 15 10 12 8 8 8 11 24 29 29 11 11 9 9 9 15 18 12 8 8 10 8 10 13 12 18 15 12 15 9 9 9 8 8 8 8 8 8 9 9 11 11 11 13 9 9 9 11 9 9 8 8 9 13 9 9 9 10 8 8 8 8 8 10 12 11 8 8 8 8 8 8 10 10 11 12 10 12 9 9 9 8 11 10 7 6 6 6 8 8 8 6 6 6 8 8 12 12 11 10 10 9 9 6 8 8 8 8 8 18 17 14 9 9 9 10 10 10 9 9 8 10 6 6 8 8 9 13 17 10 10 11 11 12 6 7 7 6 6 6 12 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no449_f24.g1 MSMg01no449_f24.g1 CHROMAT_FILE:
MSMg01no449_f24.g1 PHD_FILE: MSMg01no449_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:59 2005
         (249 letters)



>mm_chr13_60209776_60210424
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 243/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   caattggggtgatttagggatcccctaaagaaggaaccctctgaggaacagatgttccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caattggggtgatttagggatcccctaaagaaggaaccctctgaggaacagatgttccaa 390

                                                                       
Query: 65  gcagtccttcaagaccaaagctgcatttgaagcctccccagggttgatgagggaacctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gcagtccttcaagaccaaagctgcatttgaagcctccccagggttgatgagggaacctga 330

                                                                       
Query: 125 ctaaaggccatgattgccaggatggggatagcatgggacagtcggggctgggaaatgcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 329 ctaaaggccatgattgccaggatggggatagcatgggacagtcggggctgggaaacgcaa 270

                                                                       
Query: 185 cactcaacctagtggggactaaggagagaggaacggggccatcgctgcataagactatgg 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 cactcaacctagtggggactaagcagagaggaacggggccatcgctgcataagactatgg 210

                
Query: 245 taaga 249
           |||||
Sbjct: 209 taaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information