Query= MSMg01no449_m19.b1 MSMg01no449_m19.b1 CHROMAT_FILE:
MSMg01no449_m19.b1 PHD_FILE: MSMg01no449_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:31 2005
(485 letters)
>mm_chr13_29708362_29709247
Length = 886
Score = 874 bits (452), Expect = 0.0
Identities = 476/484 (98%), Gaps = 1/484 (0%)
Strand = Plus / Plus
Query: 1 tacccgcacaccaaacaaaaagggaaaataagagaagtgctaggttcagtgagtaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacccgcacaccaaacaaaaagggaaaataagagaagtgctaggttcagtgagtaagggg 260
Query: 61 agggcagggtggagacagtgtgcgaggtgcacatcagtgtgagaggaggatgcagccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggcagggtggagacagtgtgcgaggtgcacatcagtgtgagaggaggatgcagccaga 320
Query: 121 cgctatcacccactggtgccaagtgcaacctgcactcaagtatgagctgcattggtcctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctatcacccactggtgccaagtgcaacctgcactcaagtatgagctgcattggtcctt 380
Query: 181 cctggtgcagagcactccccttggcctctctcctaagaggccactgcttttatcttccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctggtgcagagcactccccttggcctctctcctaagaggccactgcttttatcttccag 440
Query: 241 ctcagaacctccctttttctaatctactattctcaactgtgttatcttctaccatgcaaa 300
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagaaagtccctttacctaatctactattctcaactgtgttatcttctaccatgcaaa 500
Query: 301 cggggcaaattagatgctttccaatctagtagagatgtagatttctacacaataaaaatt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggggcaaattagatgctttccaatctagtagagatgtagatttctacacaataaaaatt 560
Query: 361 taaatcttcttaaatttattcttcaaaaaaaaaaaca-cacacaaaattacaaacgccaa 419
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 561 taaatcttcttaaatttattcttcaaaaaaaaaaaaaacacacaaaattacaaacgccaa 620
Query: 420 cacattacttcagtgtttctgtaaacaaaaggtctagagtggtttgaatgagaatgtgtc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacattacttcagtgtttctgtaaacaaaaggtctagagtggtttgaatgagaatgtgtc 680
Query: 480 tccc 483
||||
Sbjct: 681 tccc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_m19.g1 MSMg01no449_m19.g1 CHROMAT_FILE:
MSMg01no449_m19.g1 PHD_FILE: MSMg01no449_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:31 2005
(411 letters)
>mm_chr13_29846891_29847698
Length = 808
Score = 745 bits (385), Expect = 0.0
Identities = 404/411 (98%), Gaps = 3/411 (0%)
Strand = Plus / Minus
Query: 1 tctattgaaaatagcttttattttatgaagctagtttttgtgtcaaaaataattttcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctattgaaaatagcttttattttatgaagctagtttttgtgtcaaaaataattttcaga 549
Query: 61 aatcacagtagtggtaaatccttggactttgaaaactatttttctccccaagtacaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 548 aatcacagtagtggtaaatccttggactttgaaaactatttttctcctcaagtac-aaaa 490
Query: 121 attttaaaacagaacatttgaaagaaatgatttaaaagttacgccatatgtgctggtttc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 489 attttaaaacagaacatttgaaagaaatgatttaaaagttacgtcatatgtgctggtttc 430
Query: 181 tgtgggtaacattgacaaatgctcagctaatcttttctatattggcttctcttctatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtgggtaacattgacaaatgctcagctaatcttttctatattggcttctcttctatata 370
Query: 241 gataaaacttttatacataatcatattaagtatctatttaaataactatatatctaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gataaaacttttatacataatcatattaagtatctatttaaataactatatatctaattt 310
Query: 301 tatgaatacacgtttagttataactttttctttgagtgcttagattttttgagttcttaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatgaatacacctttagttataactttttctttgagtgcttagattttttgagttcttaa 250
Query: 361 tttactactgcaaacatagtagttaaataaatgaacatctttggctttgtt 411
||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 249 tttactactgcaaac--agtagttaaataaatgaacatctttagctttgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 808
Length adjustment: 9
Effective length of query: 402
Effective length of database: 799
Effective search space: 321198
Effective search space used: 321198
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
