Query= MSMg01no450_k14.b1 MSMg01no450_k14.b1 CHROMAT_FILE:
MSMg01no450_k14.b1 PHD_FILE: MSMg01no450_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:40 2005
(500 letters)
>mm_chr13_104141020_104141916
Length = 897
Score = 907 bits (469), Expect = 0.0
Identities = 491/499 (98%), Gaps = 3/499 (0%)
Strand = Plus / Minus
Query: 2 attttatctaaacacctttcctctactcctccttgggcatatttatcttcatcccagcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 attttatctaaacacctttcctctactcctccttgggcatatttatcttcatcccagcca 638
Query: 62 atcattttccttttgcattgcctttgcctgaaaacaaaattcccctttgtcatttctgac 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atcattttccttttgcattgcctttgcctgaaaacaaaattcccctttgtcatttctgac 578
Query: 122 acatgtgcaagtgttcagtgtagggtgaaaatagctaaatgaaggactcataaattataa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acatgtgcaagtgttcagtgtagggtgaaaatagctaaatgaaggactcataaattataa 518
Query: 182 ttaacagtagctagccacagcagaaacttaaaccttaaaataatctatacctatacattt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttaacagtagctagccacagcagaaacttaaaccttaaaataatctatacctatacattt 458
Query: 242 attattgaaaagttgactctacgttctagagctatagcacagtctttggtgattacactc 301
|| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 457 atgagtgaaaagttgactctacattctagagctatagcacagtctttgg-gattacactc 399
Query: 302 ttaaagatttcactttcatcatctggggctgggttaaaaaccagccaagggaatttcaaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttaaagatttcactttcatcatctggggctgggttaaaaaccagccaagggaatttcaaa 339
Query: 362 gcagctggctcagcacttccgtggggggagaacactgaagactgttggttcaaatagtct 421
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 338 gcagctggctcagcacttccgtgggggga--acactgaagactgttggttcaaatagtct 281
Query: 422 gtagggtgagcttccagatacgtgctgcctggctacaatcagcgagaactgaacttagtt 481
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 280 gtagggtgagcttccagatacgtgctgcctggctacaatcagtgagaactgaacttagtt 221
Query: 482 tcatacctacaaaactctg 500
||||||||| |||||||||
Sbjct: 220 tcatacctagaaaactctg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 897
Length adjustment: 10
Effective length of query: 490
Effective length of database: 887
Effective search space: 434630
Effective search space used: 434630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_k14.g1 MSMg01no450_k14.g1 CHROMAT_FILE:
MSMg01no450_k14.g1 PHD_FILE: MSMg01no450_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:40 2005
(508 letters)
>mm_chr13_104036792_104037699
Length = 908
Score = 882 bits (456), Expect = 0.0
Identities = 498/516 (96%), Gaps = 9/516 (1%)
Strand = Plus / Plus
Query: 1 actgagatcagcaccaggaccacatgtgaacatgttcaaaatctacaccattccttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 actgagatcagcaccaggaccacatgtgaacatgttcaaaatctacaccattccttgaac 253
Query: 61 tgaccttcaagaac-------cagaagtcatttaaactgcatatgggatttggagagaaa 113
| |||||||||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct: 254 tcaccttcaagaacacccaaccagaagtcccttaa-ctgcatatgggatttggagagaaa 312
Query: 114 cactgaaaaaaccaacctgagtatcccccacagcggaggagcccagcaggaaggaacatt 173
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cactgataaaaccaacctgagtatcccccacagcggaggagcccagcaggaaggaacatt 372
Query: 174 gtagtcttgacacactgtaactcacttctggttatcctgacctaaataaaggcccgtctt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtagtcttgacacactgtaactcacttctggttatcctgacctaaataaaggcccgtctt 432
Query: 234 ttaacctttgttttttacaatcaccacagggagtggtggctgacatgtgaagccagacac 293
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttaacctttgatcataacaatcaccacagggagtggtggctgacatgtgaagccagacac 492
Query: 294 ccttaaataggaagtgggtcagaggacaaatgtgaagtgtatttaattgtctgaagcctt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccttaaataggaagtgggtcagaggacaaatgtgaagtgtatttaattgtctgaagcctt 552
Query: 354 gacacctgttgacacaaagtaggtctctcctgcccctccccc-acacacacacaccctca 412
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 553 gacacctgttgacacaaagtaggtctctcctgcccctccccccacacacacacaccctca 612
Query: 413 cacatgacatagtgtccagctgcccagttttcctgttacttctgagtcactattaactaa 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 613 cacatgacatagtgtccagctgtccagttttcctgttacttctgagtcactattaactaa 672
Query: 473 ccttcaataccactcaattaccccaaataactctaa 508
||||||||||||||||||||||||||||||||||||
Sbjct: 673 ccttcaataccactcaattaccccaaataactctaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
