BAC Information

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BAC

Clone NameMSMg01-450L03
Chromosome13 (Build37)
Map Location 56,470,112 - 56,573,012
singlet/doubletdoublet
Overlap geneLOC100040926, AU042651
Upstream geneRgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14
Downstream geneIl9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450L03.T7 (MSMg01no450_l03.b1)MSMg01-450L03.TJ (MSMg01no450_l03.g1)
ACCAG538363AG538364
length750754
length of high quality
(start - end)
305 (329 - 633)523 (80 - 602)
definitionCHROMAT_FILE: MSMg01no450_l03.b1 PHD_FILE: MSMg01no450_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:42 2005CHROMAT_FILE: MSMg01no450_l03.g1 PHD_FILE: MSMg01no450_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,470,112 - 56,470,416)(56,572,490 - 56,573,012)
sequence
CATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGAGCCGC
GGAATTCTGGCCATGCCTGCAGCGATGGATCTGTTTCTCTCCACCAAGTT
CTTCCATTAAAGCTCTGGGGTATGAAGACAGCCTCTCTCTGTAGGCTGTA
ATGATGGGGCTGCCTGAGGCCAACATGGCTCCAGACACACTCTAAGGTAT
CTTAAGCCTGCACAGCAGTCACGAGTGGCGGATGAGTTCATGCCTGATCA
TGCGTTTAAAATCCCAGCTAATAAACATTGGTGCCTCAAGGAGCCAAGAT
TTCACCTTAACGGCCAAAGGTTTTGAACTCAAGAGACTCTACACTGACTT
GTGGTTTGAAAATGGGATATGAGCTATTTATATACGCAGCCAAGTAAAAT
GTAACCTGACAGCCATTAAATATATCTAGTTAAGCAGAGAAGTGGTACTC
TGCTATCTTCTAAATCCTGAAATAACCTCTCTTCAAAACCAGCCCGGTCT
AGGCTGGCTATCTCGATCTGTGAGTGACATGAGTTCAGACGTCAACTGCC
AGGTGCTCACATACCCTGCTCAGGTTATGTCAGTCAATTGACATTCATTT
ACTAAGCACCGTGGGCCTGCCCTAAAGGGCCATAGTGCCATCCCAGCGGC
TATGTTAATCCTTATATAGAAAAAGATAGACACGACTATGTGGGAGGTGA
ACTGGCTCAGAACCCACCGTACGAAACTCCTTGCTTCTGGCCAGTGAAAC

TCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGAAAGGCTGCAAAGGTT
TATTTAAGGCCAGCTTCTAGGTTCTCTGTGGTCAGCCTGGCTGCGGGCCC
TCTCTGCTTGCATCTAGGACCCAGCATGCTGCACTGTCTGTCTGTGCTTC
CCAGCATCCCCTGCAGTGTGGGGTTGGAGGATATAAGTCAGGGCTTCTAG
GCTTCCGTGATGGTGGCCATCCTCCTTGGAAGAACTGGTTGGCCACGGAG
GCAGAGTAACAGGCTTCTCGTTGATGTGAAAATCCAGTGACCGATTCCCT
CCATCTTTGGAGCTTGGCAAGTGACACATTAGAGCCCAGGAAGGAGCAGC
AACAGCGGGGAGAGACAGTGCTGAGTCACCATCATGAAAAGGGTGGAGAG
AGGAGACCTGTTGTCCAGGGCCATCCACTGGGAAGAACGCAGGGCAACCG
GGGCAGCTAGGGGGTGGTCTTTAGTAGGCAGACCACATCTCGGCAAAAGA
ATCAAGCTGCCTTCCTGGAGGAGGAGTCCCTGGAGGACAAATAACTGGTG
AAACCAAGACCAAGAGGGAGTTGTCTCAAGGCACCATGGGAATACAGACG
GGAAGGGAGTGTTGTGTATTTCTGTTAAGAGGTTATGGTTTTACCTGTCC
CGTTTACTTTTGTGGTATCCCCGACTTTATATTATTTCTCCCCTTTTATT
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_l03.b1 MSMg01no450_l03.b1 CHROMAT_FILE:
MSMg01no450_l03.b1 PHD_FILE: MSMg01no450_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:42 2005
         (305 letters)



>mm_chr13_56469912_56470616
          Length = 705

 Score =  590 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagagactctacactgacttgtggtttgaaaatgggatatgagctatttatatacgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagagactctacactgacttgtggtttgaaaatgggatatgagctatttatatacgca 260

                                                                       
Query: 61  gccaagtaaaatgtaacctgacagccattaaatatatctagttaagcagagaagtggtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaagtaaaatgtaacctgacagccattaaatatatctagttaagcagagaagtggtac 320

                                                                       
Query: 121 tctgctatcttctaaatcctgaaataacctctcttcaaaaccagcccggtctaggctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgctatcttctaaatcctgaaataacctctcttcaaaaccagcccggtctaggctggc 380

                                                                       
Query: 181 tatctcgatctgtgagtgacatgagttcagacgtcaactgccaggtgctcacataccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctcgatctgtgagtgacatgagttcagacgtcaactgccaggtgctcacataccctg 440

                                                                       
Query: 241 ctcaggttatgtcagtcaattgacattcatttactaagcaccgtgggcctgccctaaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaggttatgtcagtcaattgacattcatttactaagcaccgtgggcctgccctaaagg 500

                
Query: 301 gccat 305
           |||||
Sbjct: 501 gccat 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no450_l03.g1 MSMg01no450_l03.g1 CHROMAT_FILE:
MSMg01no450_l03.g1 PHD_FILE: MSMg01no450_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:43 2005
         (523 letters)



>mm_chr13_56572290_56573212
          Length = 923

 Score =  942 bits (487), Expect = 0.0
 Identities = 514/523 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgaaaggctgcaaaggtttatttaaggccagcttctaggttctctgtggtcagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tagtgaaaggctgcaaaggtttatttaaggccagcttctaggttctctgtggtcagcctg 664

                                                                       
Query: 61  gctgcgggccctctctgcttgcatctaggacccagcatgctgcactgtctgtctgtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 663 gctgcgggccctctctgcttgcatctaggacccagcatgctgcactgtctgcctgtgctt 604

                                                                       
Query: 121 cccagcatcccctgcagtgtggggttggaggatataagtcagggcttctaggcttccgtg 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 603 cccagcagcccctgcagtgtggggttggaggatataagtcagggcttctaggcttcccta 544

                                                                       
Query: 181 atggtggccatcctccttggaagaactggttggccacggaggcagagtaacaggcttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atggtggccatcctccttggaagaactggttggccacggaggcagagtaacaggcttctc 484

                                                                       
Query: 241 gttgatgtgaaaatccagtgaccgattccctccatctttggagcttggcaagtgacacat 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gctgatgtgaaaatccagtgaccgattccctccatctttggagcttggcaagtgacacat 424

                                                                       
Query: 301 tagagcccaggaaggagcagcaacagcggggagagacagtgctgagtcaccatcatgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tagagcccaggaaggagcagcaacagcggggagagacagtgctgagtcaccatcatgaaa 364

                                                                       
Query: 361 agggtggagagaggagacctgttgtccagggccatccactgggaagaacgcagggcaacc 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 363 agggtggagagaggagacctgttgtccagggccatccactgggaagaaagcagggcaacc 304

                                                                       
Query: 421 ggggcagctagggggtggtctttagtaggcagaccacatctcggcaaaagaatcaagctg 480
           |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||
Sbjct: 303 ggggcagctagggggtggtccttagtaggtagaccacatctcagcaaaagaatcaagctg 244

                                                      
Query: 481 ccttcctggaggaggagtccctggaggacaaataactggtgaa 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccttcctggaggaggagtccctggaggacaaataactggtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)