Query= MSMg01no450_o24.b1 MSMg01no450_o24.b1 CHROMAT_FILE:
MSMg01no450_o24.b1 PHD_FILE: MSMg01no450_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:01 2005
(508 letters)
>mm_chr13_71347835_71348742
Length = 908
Score = 946 bits (489), Expect = 0.0
Identities = 501/505 (99%), Gaps = 2/505 (0%)
Strand = Plus / Plus
Query: 5 gaattctccatttgttc-ttcaagcactagatccttgactaaagcccctagcatgccaaa 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatttg-tctttcaagcactagatccttgactaaagcccctagcatgccaaa 263
Query: 64 gcatcattgttggattatattgaagttcttaattataaaaatgacttggttagcgttagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcatcattgttggattatattgaagttcttaattataaaaatgacttggttagcgttagc 323
Query: 124 actcttgtgttctgtaggaggcatttccaggccccattctctaccacagacttaatataa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actcttgtgttctgtaggaggcatttccaggccccattctctaccacagacttaatataa 383
Query: 184 gaagcattaaatatgagtctcttctgtagaatgctataaacccgtgtttgagactgaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaagcattaaatatgagtctcttctgtagaatgctataaacccgtgtttgagactgaaaa 443
Query: 244 tacaaatatttttatatcttcattttataagacttttataattttaaaattttgaccctc 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 tacaaatatttttatatcttcattttataagacttatataattttaaaattttgaccctc 503
Query: 304 ccagctggaaaatgtttatgcatacaaaaccctgacacattctctgtgggaagtggtcaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccagctggaaaatgtttatgcatacaaaaccctgacacattctctgtgggaagtggtcaa 563
Query: 364 cttctcacccctccatttcccatgtgccaattcttttcagactgcccaatagaacaagac 423
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 cttctcacccctccatttcccatgcgccaattcttttcagactgcccaatagaacaagac 623
Query: 424 agtgaggttacaccacagccaatggggaaagacacagtcactacctgagttatgccttct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agtgaggttacaccacagccaatggggaaagacacagtcactacctgagttatgccttct 683
Query: 484 gtctgtatgcttttgtcttttgagc 508
|||||||||||||||||||||||||
Sbjct: 684 gtctgtatgcttttgtcttttgagc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no450_o24.g1 MSMg01no450_o24.g1 CHROMAT_FILE:
MSMg01no450_o24.g1 PHD_FILE: MSMg01no450_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:01 2005
(515 letters)
>mm_chr13_71540775_71541688
Length = 914
Score = 895 bits (463), Expect = 0.0
Identities = 502/515 (97%), Gaps = 1/515 (0%)
Strand = Plus / Minus
Query: 1 agttttctccacagattggcttggcccttagtagagattcagaaaatagtttgaatgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agttttctccacagattggcttggcccttagtagagattcagaaaatagtttgaatgtca 655
Query: 61 ggattagtaacagtcaatcagtttgggctgtcaaatagctctgagtttaaattgtcatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 654 ggattagtaacagtcaatcagtttgggctgtcaaatagctctgagtttaaattgttatgt 595
Query: 121 ttcgatcatttcaaattttggttggataaaagcacatatacccttacatacacatacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcgatcatttcaaattttggttggataaaagcacatatacccttacatacacatacata 535
Query: 181 catgtatgcacatagcatgtggccacaaatgactacatgtgagaactctttagagctatg 240
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 534 catgtatgcacatagcatgtgaccacaaatgactacatgtgagtactctttagagctatg 475
Query: 241 ttcttggtttgttttgagcaggggtgtcgcaaggatgcttctctccatgggatgcagaaa 300
||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 474 ttcttggcatgtggggagcaggggtgtggcaaggatgcttctctccatgggatgcagaaa 415
Query: 301 ggacagtggctgttactttgaggttatttggctctagctgtttttcactgcactgttgca 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaacagtggctgttactttgaggttatttggctctagctgtttttcactgcactgttgca 355
Query: 361 gaaactgcttgtggagagtccttttgctctccttctgtgttctcaaataccaaaagtgct 420
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 354 gaaactgcatgtggagagtccttttgctctccttctgtgttctcaaataacaaaagtgct 295
Query: 421 gattgtgatcaggccagaccctccacagaaatatgctgaattgattcacccttcaacaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gattgtgatcaggccagaccctccacagaaatatgctgaattgattcacccttcaacaac 235
Query: 481 taaattttctggaaaggattggaacttttatatca 515
||||||||||||||||||||||||| |||||||||
Sbjct: 234 taaattttctggaaaggattggaac-tttatatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space: 456520
Effective search space used: 456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
