BAC Information

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BAC

Clone NameMSMg01-451H09
Chromosome13 (Build37)
Map Location 118,741,688 - 118,900,847
singlet/doubletdoublet
Overlap geneHcn1, LOC100041695, LOC674926
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451H09.T7 (MSMg01no451_h09.b1)MSMg01-451H09.TJ (MSMg01no451_h09.g1)
ACCAG538944AG538945
length753763
length of high quality
(start - end)		677 (72 - 748)666 (79 - 744)
definitionCHROMAT_FILE: MSMg01no451_h09.b1 PHD_FILE: MSMg01no451_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:43 2005CHROMAT_FILE: MSMg01no451_h09.g1 PHD_FILE: MSMg01no451_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,741,688 - 118,742,364)(118,900,197 - 118,900,847)
sequence
NNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTACTTCGCTGCCAAACTAATGGTCAGCATCATTTAATGCA
TATGACTTGGCAGAGGAAATTCAGCTTAATTCAACAATTTAAGGCTGCAG
AGAAACATGTGATACCATGATGAGCAGCAATTAGATCACTGGTAATTTCT
CCTGTATTATAGAAACTTGCATCTGATCATTGCAGTCCTGAAGCCCAGTG
GGTTAAGTGGCTATAAATATAATAAACTTTTTTTTACTACTTTATGATTA
AAATAAGCTAATGTAAGAACAATCTATAAGATTATCTATAGACAGATTTA
ACTTAATTTTTCCATTCTTTTTACCCTTTTGCTTGTGGATTTTTTAAATT
TATAAATCATTATTTTTATATTGACTTTCTATTTTATGCATCGATAACAA
AAGGTAATAATTATCTGGCCTTTTTTCATTATTCATTTGTACCTACATAT
GATCAAATGTGAATAAATTAGGGTCCCTAAGACTGTTTCTTTACCTTAAT
TAAAGAAATTTTAAATTATAGTTGGATTATGTTGCCTAAATATATTTTAA
CTCCTTTGTTCACTGACTTATTCATTCATACTCCTACAGTCTGTCCCAAA
TGATTATAATGTCAGTGACCATTGTAGGTAATAGTACTGAAGTTAATAGT
AAGGAAGGGAAGTGTTTTTCTGCCCTATTACAGTTTACATTTTAGTTGTT
TCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTGCTAGTTATTCTGTAT
CCGTCAAATTCTGCTGAAACGTGCAACCTAAATCTTTGGTAAAAAGAGTA
CCTCATGATAATATATTTTCCATTTATATATGTGAAAGCAATAATTAGTA
TGAATCTCATTACAATATATCAAGAAAGAAAATAGCAAAAGAAGAAAATA
TGCAATTAAATAAGTTTTGCCCTGGGTTGCTTTATTGTTCTCTTACATGG
GAATGGTATGTGGCCAAGTCCAGCCCAGAACAGCTAGATGACAAGAAAAA
AATGCAAAAGTGACAGTTCTCACACTTTTAAAACAGAAATAAAATTTCAT
AATTTTAAAATTATTTTATATACTGATAAAGAAAACAGTACAGTTTGATT
TTCTTTATTCAATCAAATGGAACTTAGTTGGTTCTTAAATTTTGTTATGT
ATGTGTGTTTTGTTCGTATGGTACATGTTGGGGGAGGCATACTCGTCTTG
TGGAGGCCATAGGCTAACATCAAGATAAATTCTTTTCCCTTTTTGTTTTT
TTCCTTTGTTTTGTTTTTGTGTGTTTGTTTGTTTGTTTGTTTTTGGAGGC
AGAATTAATTTTTGAATTGATCTGTCTTCACAACTCCCCACCCCTGGTCC
CCCATTCATTAAGTGATCAGATGACAAGAGGCTAATCCTGCCACCTTTGG
TTTTTACATANGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_h09.b1 MSMg01no451_h09.b1 CHROMAT_FILE:
MSMg01no451_h09.b1 PHD_FILE: MSMg01no451_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:43 2005
         (677 letters)



>mm_chr13_118741488_118742564
          Length = 1077

 Score = 1309 bits (677), Expect = 0.0
 Identities = 677/677 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaactaatggtcagcatcatttaatgcatatgacttggcagaggaaattcagcttaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaactaatggtcagcatcatttaatgcatatgacttggcagaggaaattcagcttaatt 260

                                                                       
Query: 61  caacaatttaaggctgcagagaaacatgtgataccatgatgagcagcaattagatcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacaatttaaggctgcagagaaacatgtgataccatgatgagcagcaattagatcactg 320

                                                                       
Query: 121 gtaatttctcctgtattatagaaacttgcatctgatcattgcagtcctgaagcccagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatttctcctgtattatagaaacttgcatctgatcattgcagtcctgaagcccagtgg 380

                                                                       
Query: 181 gttaagtggctataaatataataaacttttttttactactttatgattaaaataagctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttaagtggctataaatataataaacttttttttactactttatgattaaaataagctaa 440

                                                                       
Query: 241 tgtaagaacaatctataagattatctatagacagatttaacttaatttttccattctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaagaacaatctataagattatctatagacagatttaacttaatttttccattctttt 500

                                                                       
Query: 301 tacccttttgcttgtggattttttaaatttataaatcattatttttatattgactttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacccttttgcttgtggattttttaaatttataaatcattatttttatattgactttcta 560

                                                                       
Query: 361 ttttatgcatcgataacaaaaggtaataattatctggccttttttcattattcatttgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttatgcatcgataacaaaaggtaataattatctggccttttttcattattcatttgta 620

                                                                       
Query: 421 cctacatatgatcaaatgtgaataaattagggtccctaagactgtttctttaccttaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctacatatgatcaaatgtgaataaattagggtccctaagactgtttctttaccttaatt 680

                                                                       
Query: 481 aaagaaattttaaattatagttggattatgttgcctaaatatattttaactcctttgttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagaaattttaaattatagttggattatgttgcctaaatatattttaactcctttgttc 740

                                                                       
Query: 541 actgacttattcattcatactcctacagtctgtcccaaatgattataatgtcagtgacca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actgacttattcattcatactcctacagtctgtcccaaatgattataatgtcagtgacca 800

                                                                       
Query: 601 ttgtaggtaatagtactgaagttaatagtaaggaagggaagtgtttttctgccctattac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgtaggtaatagtactgaagttaatagtaaggaagggaagtgtttttctgccctattac 860

                            
Query: 661 agtttacattttagttg 677
           |||||||||||||||||
Sbjct: 861 agtttacattttagttg 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_h09.g1 MSMg01no451_h09.g1 CHROMAT_FILE:
MSMg01no451_h09.g1 PHD_FILE: MSMg01no451_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:43 2005
         (666 letters)



>mm_chr13_118899782_118900847
          Length = 1066

 Score = 1259 bits (651), Expect = 0.0
 Identities = 651/651 (100%)
 Strand = Plus / Minus

                                                                        
Query: 16   tctgtatccgtcaaattctgctgaaacgtgcaacctaaatctttggtaaaaagagtacct 75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tctgtatccgtcaaattctgctgaaacgtgcaacctaaatctttggtaaaaagagtacct 1007

                                                                        
Query: 76   catgataatatattttccatttatatatgtgaaagcaataattagtatgaatctcattac 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 catgataatatattttccatttatatatgtgaaagcaataattagtatgaatctcattac 947

                                                                        
Query: 136  aatatatcaagaaagaaaatagcaaaagaagaaaatatgcaattaaataagttttgccct 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  aatatatcaagaaagaaaatagcaaaagaagaaaatatgcaattaaataagttttgccct 887

                                                                        
Query: 196  gggttgctttattgttctcttacatgggaatggtatgtggccaagtccagcccagaacag 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  gggttgctttattgttctcttacatgggaatggtatgtggccaagtccagcccagaacag 827

                                                                        
Query: 256  ctagatgacaagaaaaaaatgcaaaagtgacagttctcacacttttaaaacagaaataaa 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  ctagatgacaagaaaaaaatgcaaaagtgacagttctcacacttttaaaacagaaataaa 767

                                                                        
Query: 316  atttcataattttaaaattattttatatactgataaagaaaacagtacagtttgattttc 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  atttcataattttaaaattattttatatactgataaagaaaacagtacagtttgattttc 707

                                                                        
Query: 376  tttattcaatcaaatggaacttagttggttcttaaattttgttatgtatgtgtgttttgt 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  tttattcaatcaaatggaacttagttggttcttaaattttgttatgtatgtgtgttttgt 647

                                                                        
Query: 436  tcgtatggtacatgttgggggaggcatactcgtcttgtggaggccataggctaacatcaa 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  tcgtatggtacatgttgggggaggcatactcgtcttgtggaggccataggctaacatcaa 587

                                                                        
Query: 496  gataaattcttttccctttttgtttttttcctttgttttgtttttgtgtgtttgtttgtt 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  gataaattcttttccctttttgtttttttcctttgttttgtttttgtgtgtttgtttgtt 527

                                                                        
Query: 556  tgtttgtttttggaggcagaattaatttttgaattgatctgtcttcacaactccccaccc 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526  tgtttgtttttggaggcagaattaatttttgaattgatctgtcttcacaactccccaccc 467

                                                               
Query: 616  ctggtcccccattcattaagtgatcagatgacaagaggctaatcctgccac 666
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466  ctggtcccccattcattaagtgatcagatgacaagaggctaatcctgccac 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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