Query= MSMg01no452_h08.b1 MSMg01no452_h08.b1 CHROMAT_FILE:
MSMg01no452_h08.b1 PHD_FILE: MSMg01no452_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:01 2005
(686 letters)
>mm_chr13_112387909_112388997
Length = 1089
Score = 1071 bits (554), Expect = 0.0
Identities = 571/578 (98%), Gaps = 3/578 (0%)
Strand = Plus / Minus
Query: 5 gaattccagaatgttgctccctgacaacagccttccacaactcccaaacatgagtcctcc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaattccagaaagttgctccctgacaacagccttccacaactcccaaacatgagtcctcc 519
Query: 65 acttggcctttgagccaccagagttcaccacccactgggcaactgcccgaggtctcctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acttggcctttgagccaccagagttcaccacccactgggcaactgcccgaggtctcctct 459
Query: 125 aactaccccgtttctgtctc---tgtgaacccgtctcagtgccaccacaggtttgcctgt 181
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 458 aactaccccgtttctgtctctattgtgaacccgtctcagtgccaccacaggtttgcctgt 399
Query: 182 gcttttgctctggcaggctcttatgtagcctgcgatggcctatagctcctgatcctactg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gcttttgctctggcaggctcttatgtagcctgcgatggcctatagctcctgatcctactg 339
Query: 242 ctgtaacccggactgtcttgccactgacttgagtcttggcccctctggctcccatctcac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgtaacccggactgtcttgccactgacttgagtcttggcccctctggctcccatctcac 279
Query: 302 cccagctccatccctccatttattttttgtccctgctctcccactgcttgaagattactg 361
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 cccagctccatccctccatttattttctgtccctgctctcccactgcttgaagattactg 219
Query: 362 agaaatcatgtaactgtagattggttgggatggcatttacctaccgtgcacaaagcccca 421
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 218 agaaatcatgtaactgtagattggttgggatggcgtttacctaccgtgtacaaagcccca 159
Query: 422 gttttaaccccgagtatcatatagactgtgagttgtgatatctgcttataagcccagctc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gttttaaccccgagtatcatatagactgtgagttgtgatatctgcttataagcccagctc 99
Query: 482 ctgagaggtgggtacagaaagatgagaaattcaaagtcattcttggctataaagtgagtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ctgagaggtgggtacagaaagatgagaaattcaaagtcattcttggctataaagtgagtt 39
Query: 542 ataggctagcctggactacatgagatactgtcccaaaa 579
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ataggctagcctggactacatgagatactgtcccaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1089
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1079
Effective search space: 729404
Effective search space used: 729404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_h08.g1 MSMg01no452_h08.g1 CHROMAT_FILE:
MSMg01no452_h08.g1 PHD_FILE: MSMg01no452_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:01 2005
(621 letters)
>mm_chr13_112215052_112216072
Length = 1021
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%)
Strand = Plus / Plus
Query: 1 tggcaaactccaaaataaaagacctactttttaaaacctatatttagtattttgttatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcaaactccaaaataaaagacctactttttaaaacctatatttagtattttgttatac 260
Query: 61 ttagactgaaattttatgggagcaaaaacgtaggcgtattttggtttaatttctagtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagactgaaattttatgggagcaaaaacgtaggcgtattttggtttaatttctagtctt 320
Query: 121 ggcgggaaacaaaacaaggaaaaagtaagtcctagcttatggtgagagctgaggattaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgggaaacaaaacaaggaaaaagtaagtcctagcttatggtgagagctgaggattaat 380
Query: 181 acaaaaacagataaaaatattatagtctggcataaaacgccaaaacacctggtctatgac 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaaaacagataaaaatattgtagtctggcataaaacgccaaaacacctggtctatgac 440
Query: 241 tactttctttataacagacaaggtctttatactgcacccctatcaggcagctcacaacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactttctttataacagacaaggtctttatactgcacccctatcaggcagctcacaacta 500
Query: 301 ctcgcaactccagttccaggggatctgacctcctcctatgcacaatataaatgaggttgg 360
|| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctagcaactccagctccaggggatctgacctcctcctatgcagaatataaatgaggttgg 560
Query: 361 gaaagaggaatataaaagcacctgagagtaaaccaagcttgaaaattggctacaattata 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagagaggaatataaaagcacctgagagtaaaccaagcttgaaaattggctacaattata 620
Query: 421 gttagtggtctaacatgctatctaaacaaaaatgattctaaatttgatgtgcaggtgaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttagtggtctaacatgctatctaaacaaaaatgattctaaatttgatgtgcaggtgaga 680
Query: 481 agtcaacattcttcaaatagctttgtgaaattgataaaactttaaaagctttttctaagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtcaacattcttcaaatagctttgtgaaattgataaaactttaaaagctttttctaagc 740
Query: 541 tcaaggaattgcattttaacaaaaaaaagtataaacctgtaggaaataaagcatgtgtag 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaggaattgcattttaacaaagaaaagtataaacctgtaggaaataaagcatgtgtag 800
Query: 601 agaccagtatcttgaacacta 621
|||||||||||||||||||||
Sbjct: 801 agaccagtatcttgaacacta 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
