BAC Information

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BAC

Clone NameMSMg01-452O16
Chromosome13 (Build37)
Map Location 26,543,642 - 26,543,979
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452O16.T7 (MSMg01no452_o16.b1)MSMg01-452O16.TJ (MSMg01no452_o16.g1)
ACCAG540055AG540056
length762759
length of high quality
(start - end)
676 (47 - 722)606 (76 - 681)
definitionCHROMAT_FILE: MSMg01no452_o16.b1 PHD_FILE: MSMg01no452_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:37 2005CHROMAT_FILE: MSMg01no452_o16.g1 PHD_FILE: MSMg01no452_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGAGGAATACTGAATGGCTGAGAATCACCTAAAAAAAGT
TCAACTTCCGTAGTCATCAGGGAAATGCAAATGAAAACAACCCTGAGATT
CCTCCTCACACCAGTCAGAATGGCTAATATCAAAAATTCAGGTCAAAGCA
GATGCTGGCATGGATGTGGGGAAAGATGAACACTCCTCCATTGCTGGTAG
GATTGCAAGCTGGTTCAATCACTCTGGAAATCAGTTTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCTGAGGATCCAGCAATACCTCTCCTGGCCA
TATACCCAGAGGATGCTCAAACATGTAATAAGGACACATGCTCTAGGAAT
ATTTTTATTGATTATTTTATTTAATTTCATTTCAAATTTTGTCCCCATTC
CTGTTCTCCACTTTGCAAATCCACCATTCTATCTTGATCTATTTGCTTCT
AAGTTGGTATCCCCTTACCTACCCACCCACTCCTGCCTTACCCCTCTAGC
ATCCCCCTTTACTGGTTCAATAAGCCTCCACAGGCCCAGGAGTCTTCTCT
CTCATTGATTCCAGATAAGACAGTCCTCTGCCACATATGTAGCAGGAGCC
ATGGACCTACCTATGTATACTCTTTGGTTGGTGGTTTAGTCCCTGGGAGC
TCTGAGGGAGCACCTGACTAAGACAGATGCAGATACTCACAGTCAACCAT
TGGACTGAGCTC
ACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTATATGCATAAATTTATTTAA
CTTAAAAAAAGCCTCACTACCTTAAATTGTCAATGGCCCTGTAATTACTC
AAAGACATTTTATTGAATTTTCTAAATTTGAATACTTTTCTTTCTTCATT
TAAAGAAAGTAATACTTTGTTCCCCCTTCTAAGTTTTATTTAAGCATTTT
CACTTGGGTCTTCCTTCAATCTAATTTCTTTGGGTGTGTGTGTATTCTGT
ATATTTTGGGCTAATGTTTACTTATCACTAAGTACATCACTCAGTGATGC
ATGTTCTTTTGGGTCAAGGTTACCTCACTTTGCATGATATTTTTACTTTC
ATTCATTTGCCTGCAAAACGAATGATCTCCTTGTTTTTAAAGGTGAGTCA
TATTCCATTGTGTAAGTGAACCATTTATGTATCCATTCTTTGGTTGAGGG
ACATCAGGGTTGCTTCAGTTTCTGGCAATCATTGATAAGGCTGCTATAAA
CATAGTGGAGCAAGTGCCATTGTTGTATGGTGGGACATCTTTTGTGCATA
TACCCAGGAGCAGAATAGCTGGGTGTTCAGGTATTTTTATTTCCAATTTT
CTAAGGAACCACCAGATTGATTCCTGAGTGGCTGTGAAACATTGCAATTA
CACCAGCAAAGGAAAAGTATTTCCCTTTCTCCAGATCCTTGCCCACATGT
GCTCTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_o16.g1 MSMg01no452_o16.g1 CHROMAT_FILE:
MSMg01no452_o16.g1 PHD_FILE: MSMg01no452_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:38 2005
         (606 letters)



>mm_chr13_26543642_26544648
          Length = 1007

 Score =  630 bits (326), Expect = 0.0
 Identities = 335/338 (99%), Gaps = 1/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtatatgcataaatttatttaactt-aaaaaaagcctcactaccttaaattgtcaat 59
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 338 tttgtatatgcataaatttatttaacttaaaaaaaagcctcactaccttaaattatcaat 279

                                                                       
Query: 60  ggccctgtaattactcaaagacattttattgaattttctaaatttgaatacttttctttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggccctgtaattactcaaagacattttattgaattttctaaatttgaatacttttctttc 219

                                                                       
Query: 120 ttcatttaaagaaagtaatactttgttcccccttctaagttttatttaagcattttcact 179
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttcatttaaagaaagtaatattttgttcccccttctaagttttatttaagcattttcact 159

                                                                       
Query: 180 tgggtcttccttcaatctaatttctttgggtgtgtgtgtattctgtatattttgggctaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tgggtcttccttcaatctaatttctttgggtgtgtgtgtattctgtatattttgggctaa 99

                                                                       
Query: 240 tgtttacttatcactaagtacatcactcagtgatgcatgttcttttgggtcaaggttacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  tgtttacttatcactaagtacatcactcagtgatgcatgttcttttgggtcaaggttacc 39

                                                 
Query: 300 tcactttgcatgatatttttactttcattcatttgcct 337
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tcactttgcatgatatttttactttcattcatttgcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space:   594212
Effective search space used:   594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)