BAC Information

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BAC

Clone NameMSMg01-454B13
Chromosome13 (Build37)
Map Location 81,027,943 - 81,028,260
singlet/doubletsinglet
Overlap geneArrdc3
Upstream geneLOC382780, EG666933
Downstream geneLOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454B13.T7 (MSMg01no454_b13.b1)MSMg01-454B13.TJ (MSMg01no454_b13.g1)
ACCAG540954AG540955
length754744
length of high quality
(start - end)
518 (70 - 587)318 (323 - 640)
definitionCHROMAT_FILE: MSMg01no454_b13.b1 PHD_FILE: MSMg01no454_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:11 2005CHROMAT_FILE: MSMg01no454_b13.g1 PHD_FILE: MSMg01no454_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCCCTGTACTCCATTTTTCATATGGTTATTTGCTTCTC
TGGAGTCTTCTTGAGTTCTTTGTATATATTGGATACTAGCCCTCTATCAG
ATGTAGGATTGGTAAAGATCTTTTTCCAATCCCTGGGTTGCCATTTTATA
CTATTGGCAGTGTCCTTTGCCTTACAGAAGCTTAGCAATTTTATAAGGTC
CTATTTGTCAATTCATGATCTTAGAGCATAAGCTTAATGGTGTTCTGTTC
AGGAAATTTTCCCAATTTTTTATGTGCTTGAGGCTCTTTCCCACTTTTTC
CTCTAGAAGTTTCAGTGTCTCTGGTTTTATGTTAAGTTCCTTGATCCACT
TGGACTTGACCTTTTACAAAGAGATATGAATGGATCAATTTGCATTCTTC
TCCATGCTAACTGCCAGTCGAACTAGCACCATTTGTTGAAAATGCTGTCT
TTTGCAGGGGCATGGTTGTAGGGAAAAGGAGGGAAGAAGAGAGCCAGCGT
CCTGCCAGAGATCCTGTGCTCTGGGCAGGTGGACGTGGGAGGACTGCCGG
ATGCTTTCCACTCGACCCGGGGCGGGCATATGGCTGTGTGAAGCCACTGA
TCCCCTTAGCGGGAGGGTGGGGGTGGACAAAAAACAGCCCCCCAGATCAG
GTTTTCAAGCTCTGGGTTCCCACGCTGGATAACTTGGAGGGAGTGAAAAT
AAAN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTCAGTTCTTACCAGTAATGAAGGAGTG
TTGATATCTATGTGCTCAAAGACTGTAAATTCCTTCTTTAATTTTACTGG
TAGAAGCCAAGGCCTATGCAATTCGGCTTTCACCCAATAGCGCACACTGC
CATGTCGGCCTTCGAATGAGGTAGCAAGTGGTCTGTGTAAAATATAAAGA
TGGATATATTAATCTTATGCCTGTTTCTAAAAATTCAGTATTAGATCAGA
ATAAACCATTAGTATGTTTTAACTGTCTGTAAGGTACCACGTATAGAAAG
ATGTCACCATGCGCTGTTTTTGGATCAAGGAGGTACCACAAGTAAAATTT
CTTACAGCTTTCCAAAGGGATAAGTCACCGGGGAAAGATCTTTTAATTTC
AAGTAATGATGAGAGGTAAATGTAACAGAAAATTTGTTTTTAAAGCCACA
AGAATATAATTCTTTTAAACTAAAGAGCCTACTTTTAATGTTGGTGGCAA
AATTATGAAAGTTAAATACTATTCTTGAAAAGGTAAAAATTTTAATACAA
AAAATTAAAAACTGGCCTTACTATTTCTATTTTAAAATCCTAGATCCTAA
TCATTCAGAANAGAGTCTTTATACTGCTCTACTTTTGTTAACCAGGAATT
AGAGCCTCTTTTTATAGNCACTAATTAATATTGCATAAAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_b13.g1 MSMg01no454_b13.g1 CHROMAT_FILE:
MSMg01no454_b13.g1 PHD_FILE: MSMg01no454_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:11 2005
         (318 letters)



>mm_chr13_81027800_81028517
          Length = 718

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtctgtaaggtaccacgtatagaaagatgtcaccatgcgctgtttttggatcaaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ctgtctgtaaggtaccacgtatagaaagatgtcaccatgcgctgtttttggatcaaggag 402

                                                                       
Query: 61  gtaccacaagtaaaatttcttacagctttccaaagggataagtcaccggggaaagatctt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtaccacacgtaaaatttcttacagctttccaaagggataagtcaccggggaaagatctt 342

                                                                       
Query: 121 ttaatttcaagtaatgatgagaggtaaatgtaacagaaaatttgtttttaaagccacaag 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttattttcaagtaatgatgagaggtaaatgtaacagaaaatttgtttttaaagccacaag 282

                                                                       
Query: 181 aatataattcttttaaactaaagagcctacttttaatgttggtggcaaaattatgaaagt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aatacaattcttttaaactaaagagcctacttttaatgttggtggcaaaattatgaaagt 222

                                                                       
Query: 241 taaatactattcttgaaaaggtaaaaattttaatacaaaaaattaaaaactggccttact 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 221 taaatactattcttgaaaaggtaaaaattttaatacaaaaaagtaaaaactggccttact 162

                             
Query: 301 atttctattttaaaatcc 318
           ||||||||||||||||||
Sbjct: 161 atttctattttaaaatcc 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)