BAC Information

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BAC

Clone NameMSMg01-455B15
Chromosome13 (Build37)
Map Location 49,880,617 - 49,881,198
singlet/doubletsinglet
Overlap geneLOC670357
Upstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488
Downstream geneEG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455B15.T7 (MSMg01no455_b15.b1)MSMg01-455B15.TJ (MSMg01no455_b15.g1)
ACCAG541721AG541722
length733741
length of high quality
(start - end)		582 (64 - 645)586 (76 - 661)
definitionCHROMAT_FILE: MSMg01no455_b15.b1 PHD_FILE: MSMg01no455_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:31 2005CHROMAT_FILE: MSMg01no455_b15.g1 PHD_FILE: MSMg01no455_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCGCGGA
ATTCCTGGTTCCTCTCTGTGAGGGTGTAGAGATGGTCAAAGCCCATTCTT
CTCCTCACTCTACTCTGATGTTGATCATGGGCTCTCAGGGCATCAACATT
TGACTCTTGCCTGTCTCTAGGATGGCTGTTTCCTTTCGGACTAGTGTGAT
CACAACTCATTCTTCTCCCTGGTTGGCTAGTCTTTGGGTCATAGGCCCTC
TCAGAAGAGTGGGAAGAGGCCTCCAGTTGGGATAACAGTTGTTCCACGTC
ACACCACTGGATCTTGGACGGGTCCTCCATTTTAAGGCCCAGTGCGTCTA
CTAGGATGTGGACCACAGCATTCAAGAGAGACTGTGCTTCAGTTGCCATA
CTATACATGAACTTCCCTCTTATTTGACTCTGTAGAGTGGATGGTGGGGC
GCTTTCATTCTTCACAGAATCTCCCTGCTCACTGTGTTTTATTTCAAGGT
TAAGATATTGTAAATTTCTTTTGATTTCTGTCAGAAGCCTTCTTACATTT
CCTGGCATATCAGCCAGACTCTCAGGAATGACTATAGCCTTGGGTTGGGT
GGAGGTATGACAGCCTCGAGAGGACTGCACTCCCCCAAGTCTTTCTTCCT
GGCTTCTGGCTCTGAATCTCATAAAATCCCCCTTCTCTTCATTAGGATGA
ACATTTTGTGATGACTTCTTGGAGTCTTATCCC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACCATTTTC
CTAAACACATGAAACTCGAGAAAAATGAAGACTGAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_b15.b1 MSMg01no455_b15.b1 CHROMAT_FILE:
MSMg01no455_b15.b1 PHD_FILE: MSMg01no455_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:31 2005
         (582 letters)



>mm_chr13_49880417_49881398
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 581/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgtgagggtgtagagatggtcaaagcccattcttctcctcactctactctgatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgtgagggtgtagagatggtcaaagcccattcttctcctcactctactctgatgttg 260

                                                                       
Query: 61  atcatgggctctcagggcatcaacatttgactcttgcctgtctctaggatggctgtttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcatgggctctcagggcatcaacatttgactcttgcctgtctctaggatggctgtttcc 320

                                                                       
Query: 121 tttcggactagtgtgatcacaactcattcttctccctggttggctagtctttgggtcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcggactagtgtgatcacaactcattcttctccctggttggctagtctttgggtcata 380

                                                                       
Query: 181 ggccctctcagaagagtgggaagaggcctccagttgggataacagttgttccacgtcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccctctcagaagagtgggaagaggcctccagttgggataacagttgttccacgtcaca 440

                                                                       
Query: 241 ccactggatcttggacgggtcctccattttaaggcccagtgcgtctactaggatgtggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccactggatcttggacgggtcctccattttaaggcccagtgcgtctactaggatgtggac 500

                                                                       
Query: 301 cacagcattcaagagagactgtgcttcagttgccatactatacatgaacttccctcttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagcattcaagagagactgtgcttcagttgccatactatacatgaacttccctcttat 560

                                                                       
Query: 361 ttgactctgtagagtggatggtggggcgctttcattcttcacagaatctccctgctcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgactctgtagagtggatggtggggcgctttcattcttcacagaatctccctgctcact 620

                                                                       
Query: 421 gtgttttatttcaaggttaagatattgtaaatttcttttgatttctgtcagaagccttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgttttatttcaaggttaagatattgtaaatttcttttgatttctgtcagaagccttct 680

                                                                       
Query: 481 tacatttcctggcatatcagccagactctcaggaatgactatagccttgggttgggtgga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacatttcctggcatatcagccagactctcaggaatgactatagccttgggttgggtgga 740

                                                     
Query: 541 ggtatgacagcctcgagaggactgcactcccccaagtctttc 582
           ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 ggtatgacagccttgagaggactgcactcccccaagtctttc 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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