BAC Information

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BAC

Clone NameMSMg01-455H08
Chromosome13 (Build37)
Map Location 100,013,896 - 100,201,842
singlet/doubletdoublet
Overlap geneZfp366, Ptcd2, Mrps27, Mtap1b
Upstream geneUtp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455H08.T7 (MSMg01no455_h08.b1)MSMg01-455H08.TJ (MSMg01no455_h08.g1)
ACCAG541993AG541994
length720726
length of high quality
(start - end)
513 (67 - 579)249 (322 - 570)
definitionCHROMAT_FILE: MSMg01no455_h08.b1 PHD_FILE: MSMg01no455_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:58 2005CHROMAT_FILE: MSMg01no455_h08.g1 PHD_FILE: MSMg01no455_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,013,896 - 100,014,408)(100,201,594 - 100,201,842)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATTTAACGCACAACCTGATGGGGCACCTGCACCTGCACTCGG
ACAGCAAGCCCTTCAAGTGTCTCTACTGCCCCAGTAAGTTCACGCTGAAG
GGGAACCTGACCCGCCACATGAAGGTCAAGCACGGAGTGATGGAGCGAGG
CCTGCACTCTCAAGGTACTACCTCCAGTGTGGTGGGAAGCCCTGCCTGCC
ATACCCAGGGGACAGCACATGGAAGAGCAGCGTGCTTTTATGGGGGCACT
TCTCAGGGTGGGGTGTTGTTATTCTTGCCCATCGAAGGGGGTGTATTTTA
GTGACCACAGCAGAGCAGGCAAGAGTAAACTCGAGCCACTGAGCAACTCT
GGAACACAATTATGATGCCAGTGGTACAGGCCATGACATCTTTGTCTTGG
GCAATACACTGTGTGCTTTATCTCTTTACATCCCCAGTCACTCCCAGCTA
GAGAACATCTATTGTTTCTATCTTGCAGGTTGGAAATCTGAGACTTCCAA
AGTTGCTCAATGAAAAAGAGAAAGGAAAAAAAAAAGTAGATTTAGAATTC
GAACCCATGCCTTTTCAACTCAGCCTTTGCTATATCCTTACTGTATGACG
ACTTTATTGCAGATAGTCCTCATTATATTATTACATACTCTTCTTCCATA
GCTAGTGGAAGTTGGGGGCT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGGCCAAAGACGAGAATGA
GAGAGCGTCCCTAAGCCCCATGGATGAGCCTGTGCCTGACTCAGAGTCTC
CTGTGGAGAAGGTTCTGTCTCCTTTACGCAGTCCTCCCCTTCTTGGATCT
GAGTCCCCATATGAAGACTTCCTGAGTGCTGATAGCAAGGTTCTTGGCAG
ACGTTCCGAAAGCCCCTTTGAAGGGAAGAATGGAAAGCAGGGCTTCCCAG
ACAGAGAAAGCCCTTTTTCTGACCTGACTTCCACTGGTCTTTACCAAGAC
AAACAGGAAGAGAAAAGCACGGGCTTCATACCCATAAAGGAAGACTTTGG
TCCAGAGAAGAAAACCAGTGATGTTGAAACCATGAGTTCTCAATCAGCTC
TAGCTTTGGATGAAAGGAAACTGGGAAGAGATGTATCTCCAACACAAATA
GACGTCAGTCAGTTTGGCTCTTTCAAAGAAGACACCAAGATGTCCATTTC
AGAAGGCACTGTTTCAGACAAGTCAGCCACACCTGTGGATGAGGGTGTGG
CAGAAGACACCTACTCCCACATGGAGGGTGTGGCCTCCGTCTCTACTGCC
TCTGTGGTTACCAGTTCGGTTTCCGAAGCCACCCCAGATGACGTGTCTCC
TTCTCCGTTGGTCCAGGTGGTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_h08.b1 MSMg01no455_h08.b1 CHROMAT_FILE:
MSMg01no455_h08.b1 PHD_FILE: MSMg01no455_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:58 2005
         (513 letters)



>mm_chr13_100013696_100014608
          Length = 913

 Score =  946 bits (489), Expect = 0.0
 Identities = 507/513 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaacctgatggggcacctgcacctgcactcggacagcaagcccttcaagtgtctctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaacctgatggggcacctgcacctgcactcggacagcaagcccttcaagtgtctctac 260

                                                                       
Query: 61  tgccccagtaagttcacgctgaaggggaacctgacccgccacatgaaggtcaagcacgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccccagtaagttcacgctgaaggggaacctgacccgccacatgaaggtcaagcacgga 320

                                                                       
Query: 121 gtgatggagcgaggcctgcactctcaaggtactacctccagtgtggtgggaagccctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgatggagcgaggcctgcactctcaaggtactacctccagtgtggtgggaagccctgcc 380

                                                                       
Query: 181 tgccatacccaggggacagcacatggaagagcagcgtgcttttatgggggcacttctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccatacccaggggacagcacatggaagagcagcgtgcttttatgggggcacttctcag 440

                                                                       
Query: 241 ggtggggtgttgttattcttgcccatcgaagggggtgtattttagtgaccacagcagagc 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtggggtggggttattcttgcccatcgaagggggtgtattttagtgaccacagcagagc 500

                                                                       
Query: 301 aggcaagagtaaactcgagccactgagcaactctggaacacaattatgatgccagtggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 aggcaagagtaaactcgagccactgagcaactctggaacacaattatgatgccagcggta 560

                                                                       
Query: 361 caggccatgacatctttgtcttgggcaatacactgtgtgctttatctctttacatcccca 420
           ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 caggccatgacgtcttcgtcttgggcagtacactgtgtgctttatctctttacatcccca 620

                                                                       
Query: 421 gtcactcccagctagagaacatctattgtttctatcttgcaggttggaaatctgagactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcactcccagctagagaacatctattgtttctatcttgcaggttggaaatctgagactt 680

                                            
Query: 481 ccaaagttgctcaatgaaaaagagaaaggaaaa 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 ccaaagttgctcaatgaaaaagagaaaggaaaa 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_h08.g1 MSMg01no455_h08.g1 CHROMAT_FILE:
MSMg01no455_h08.g1 PHD_FILE: MSMg01no455_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:58 2005
         (249 letters)



>mm_chr13_100201394_100202042
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgacttccactggtctttaccaagacaaacaggaagagaaaagcacgggcttcatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 acctgacttccactggtctttaccaagacaaacaggaagagaaaagcacgggcttcatac 390

                                                                       
Query: 61  ccataaaggaagactttggtccagagaagaaaaccagtgatgttgaaaccatgagttctc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 389 ccataaaggaagactttggtccagaaaagaaaaccagtgatgttgaaaccatgagttctc 330

                                                                       
Query: 121 aatcagctctagctttggatgaaaggaaactgggaagagatgtatctccaacacaaatag 180
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 329 aatcagctctagctttggatgaaaggaaattgggaggagatgtatctccaacacaaatag 270

                                                                       
Query: 181 acgtcagtcagtttggctctttcaaagaagacaccaagatgtccatttcagaaggcactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acgtcagtcagtttggctctttcaaagaagacaccaagatgtccatttcagaaggcactg 210

                    
Query: 241 tttcagaca 249
           |||||||||
Sbjct: 209 tttcagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)