BAC Information

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BAC

Clone NameMSMg01-455I10
Chromosome13 (Build37)
Map Location 13,495,449 - 13,495,914
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455I10.T7 (MSMg01no455_i10.b1)MSMg01-455I10.TJ (MSMg01no455_i10.g1)
ACCAG542045AG542046
length721714
length of high quality
(start - end)
272 (323 - 594)466 (58 - 523)
definitionCHROMAT_FILE: MSMg01no455_i10.b1 PHD_FILE: MSMg01no455_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:04 2005CHROMAT_FILE: MSMg01no455_i10.g1 PHD_FILE: MSMg01no455_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATC
CGCGGAATTCCAGATCCCCGAGACCCAGGCAAATCACAAGGAAGTGAAAA
CTATAAAACTTACTAACTAGATTTCTCAAGAGCATTTTCTCCTCCCAGCA
CTTCCCAGCATCTAATTTTAGATTCATGTCTTATTAGCACTGTTACATTT
CAGCCAGTTTGCGACTTCAGTGGAAAACATACTTTCGCTGCAGGGTAGAG
TCAGGCATCCTTTGCAGGATTCATGTGGTACTTTAATTATCTAAAATGAC
TCCAAGGGAATTCATGTTCATTTCCATTACCATAATGAAGACTCACATTT
AACATACACAATTACCTTTGAGGGGAAAGAGTAGGAGTTGGGATCGTGGC
ATGCTCTAGTAATCTCACTCCTGGGAACATAGCACAAGAAGCAGGAAGGA
GGGTCTCGGATGTCTGCGCTGATTGTTCTATCACTGCTGTTCACAGCAGC
CAAGGATGGAAGCAACTCAAGCCTGAACTGATGATCTAGTGGGTTAAAGG
AATGTGGTACGTGCACACAGCAGGGAGGGAACGGGGGAGGGATTCTGAGG
AAATGCTGTAAGAACATACCATGAGGATACTTATGGGAAGTGATGTAAGC
CTATCACAAAAGGATATATACTGTGTGATTCTGGTATTGGACTGCATCTT
GAAAAGCCAATACCTTAGGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATAAAAGACGTTGTTATAGGACTGGGGAAGAAGGGAATCTGG
AAGGCCTGGGGCTCTTCCCAGGAGAAGTGGAGATCCAGGAATTAGGAGGC
AATCTGGGGAGTCAGTGGAACCCAAAGCCAAGCTGGGTGTGACAACGAAG
GCCTGTGCTTCCAGCACACCAGAGGCGATAGCAGGCAGATCAACAGTTCA
AGGACAGCCTCTGCTACACTGCAAATTTGAGGCCAGTTTGGACTATGTGA
GGCCATGTCTCAGGAACCAGGAGAAAGAATATAAAATCACCCTGTGGCTT
CAGTGGTGACCTTTAATACAGGATGTCACCTCACCACGGCTTGGCTGCTG
GGACATGACTGCTAAGGGTCCAGCAAGAGCGCCTTATTAGGTAGAGAGCA
AGAGGCAACTTGCTGTGCCCCTGTGGGTGAGTGCAGATGCGCTTAGTCAG
TGAGTCCTGCAAGCAGTGGGGTCCACAAGGGAGGAACAAGAAATGCATGG
CTTGTGTGCATGGAAACCACAGACAAGAATAATCCCTGATTTGCCTAAGG
CCCGGGAGAACCCCAACTTTTCTGCGCCAGGGAACCCCAGTCCCTATGAA
AATGGGGGAACTTGGATATGTTTGTCCCTAAGTAAAGAATTCCCTATTTT
AGGAAAATCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_i10.g1 MSMg01no455_i10.g1 CHROMAT_FILE:
MSMg01no455_i10.g1 PHD_FILE: MSMg01no455_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:04 2005
         (466 letters)



>mm_chr13_13495249_13496114
          Length = 866

 Score =  841 bits (435), Expect = 0.0
 Identities = 459/467 (98%), Gaps = 2/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaagacgttgttataggactggggaagaagggaatctggaaggcctggggctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaagacgttgttataggactggggaagaagggaatctggaaggcctggggctcttc 260

                                                                       
Query: 61  ccaggagaagtggagatccaggaattaggaggcaatctggggagtcagtggaacccaaag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggagaagtggagatccaagaattaggaggcaatctggggagtcagtggaacccaaag 320

                                                                       
Query: 121 ccaagctgggtgtgacaacgaaggcctgtgcttccagcacaccagaggcgatagcaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagctgggtgtgacaacgaaggcctgtgcttccagcacaccagaggcgatagcaggca 380

                                                                       
Query: 181 gatcaacagttcaaggacagcctctgctacactgcaaatttgaggccagtttggactatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcaacagttcaaggacagcctctgctacactgcaaatttgaggccagtttggactatg 440

                                                                       
Query: 241 tgaggccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttcagtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaggccatgtctcaggaaccaggagaaagaatataaaatcaccctgtggcttcagtggt 500

                                                                       
Query: 301 gacctttaatacaggatgtcacctcaccacggcttggctgctgggacatgactgctaagg 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctttaatacaggatgccacctcaccacggcttggctgctgggacatgactgctaagg 560

                                                                       
Query: 361 gtccagcaagagcgccttattaggtagagagcaagaggcaacttgctgtgcccctgtggg 420
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 gtccagcaagagcaccttattaggtagagagcgagaggcaacttgctgtgcccctgtggg 620

                                                          
Query: 421 tgagtgcagatgcgcttagtcagtga-gtcctgcaagcagtggggtc 466
           |||||||||||| |||||||||| || |||||| |||||||||||||
Sbjct: 621 tgagtgcagatgtgcttagtcag-gaagtcctggaagcagtggggtc 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)