BAC Information

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BAC

Clone NameMSMg01-456B13
Chromosome13 (Build37)
Map Location 5,011,499 - 5,011,705
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B13.T7 (MSMg01no456_b13.b1)MSMg01-456B13.TJ (MSMg01no456_b13.g1)
ACCAG542479AG542480
length745757
length of high quality
(start - end)
239 (317 - 555)207 (326 - 532)
definitionCHROMAT_FILE: MSMg01no456_b13.b1 PHD_FILE: MSMg01no456_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:48 2005CHROMAT_FILE: MSMg01no456_b13.g1 PHD_FILE: MSMg01no456_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXAATACAAGAGAGGATCCGCGGA
ATTCTTTTTTCTCAAATCTCCTTTTATCTCCAAATTTTCACATTATGTTG
ATGTAATTCCTTTTAAAAATTCAACCTGCTTTATTTTCTTGAATTTTACA
ATATGACTCATAATTTTGAAAAATGGTCATTAAATAGCCAAAACAGTTAG
ATTAGGAAACTATTTTGGATTTTCTGTTAAATTTATAGATGTAAGAAATA
ATCAGGTGATATGTGTGTGTTGTTTAATAATCGAAGATTATTAAAGAGGC
ATAAAAATGATTTTTATTCAGGTAAATGACCCATAAAAAAGCAGAGGGGC
TCAGGAGATATGTTAGTTGATAATGTTCCTGCCATATAAGCAAGAAAAGC
TGAATGTAATCTCCAACACCCAGAAAGAATCTAGACATGGCAATGCACAG
GTATTTCCCTAGCACAGGGGCAGTGCAGGCAGACAAATCTAAAGAGGTTG
CAGGCTAGGCAGGCCGCCCTTTTGGTGAGCTAGATGTTTATTAAAGGACC
CTGTCTCATAAGAAGAGGTAGAGAGTACTATTTGAAGACACCCAGCGTTA
ATCCCTGACCTCGATTTTACACATGCACCCGTAGATTCACAACAACCCCT
ATACTCCTATTTAATTTTGCTAACACCTGCTCATAGAGGAGAAAAATATA
AGAATTTTTACACAGAACCCTCGCTTATTGAGCAACCTGCTGCTN
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCATTTACTTGAGGTCTTTCTGCT
GCTGCTCTCTGGGCTCAAGATTCTAAACTTAACCTTTCAGAAACCTGAGA
ATAAGCTGGGCACCTTCCCAGAAGAAAGTGGAATTCCAAGGCCCACCAAA
ATACAAACAAAGAAGGCAGCTGTTCGCCTTGCTTTACTCAAGAACATCTG
AAAATACTGCCCCTCTGCTGCATTCCTTCAGCGTTTCTCAAGATAGTCTG
ATACGGGGCAGGTAGAAGGGCTCNCTCCATATGATTACATTCTGCATACT
ACTTGATACAGACACTGGGAAACAAAATACCCTGGATAGGCATTTAATAT
TCTCCAGTTTTGCTGCAAAACACATTATTTCTGACAGCTACATTTTCAAG
TACCTAGTCATTGCATAAGATTCTTTACTCAAGAATCTAATTCTGGGATT
TGGAGATGGTTCGGTCAGTAATGTGACATTCTATAAGCATGCAGACCTCT
GTGAGAGCAGCAGGACTCACATAAAAGCCTCACTTGTGATGACAGCTCGA
GGAAGCAAAGACTGGGAATTCTTTGGGGGGCACAGACTAGTCCGCCGATC
TTTTTTTTTTTTAACCGGGGACGAACTCTTTCAAACTTATGGGGGCGGTA
CCTGATGAGTCAATCCTGAATTGTCCTCCGTATTTTCAAAACTATTCTTA
TTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b13.g1 MSMg01no456_b13.g1 CHROMAT_FILE:
MSMg01no456_b13.g1 PHD_FILE: MSMg01no456_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:48 2005
         (207 letters)



>mm_chr13_5011299_5011905
          Length = 607

 Score =  400 bits (207), Expect = e-116
 Identities = 207/207 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatatgattacattctgcatactacttgatacagacactgggaaacaaaataccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatatgattacattctgcatactacttgatacagacactgggaaacaaaataccctgg 260

                                                                       
Query: 61  ataggcatttaatattctccagttttgctgcaaaacacattatttctgacagctacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataggcatttaatattctccagttttgctgcaaaacacattatttctgacagctacattt 320

                                                                       
Query: 121 tcaagtacctagtcattgcataagattctttactcaagaatctaattctgggatttggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagtacctagtcattgcataagattctttactcaagaatctaattctgggatttggag 380

                                      
Query: 181 atggttcggtcagtaatgtgacattct 207
           |||||||||||||||||||||||||||
Sbjct: 381 atggttcggtcagtaatgtgacattct 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)