BAC Information

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BAC

Clone NameMSMg01-456B16
Chromosome13 (Build37)
Map Location 27,893,548 - 27,894,114
singlet/doubletsinglet
Overlap genePrl2a1
Upstream geneLOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1
Downstream geneOTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B16.T7 (MSMg01no456_b16.b1)MSMg01-456B16.TJ (MSMg01no456_b16.g1)
ACCAG542485AG542486
length7371,271
length of high quality
(start - end)		567 (69 - 635)---
definitionCHROMAT_FILE: MSMg01no456_b16.b1 PHD_FILE: MSMg01no456_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:48 2005CHROMAT_FILE: MSMg01no456_b16.g1 PHD_FILE: MSMg01no456_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCCTGATTCTCTAAACAGCCTGCTGTGGAACTCCTCAGAGATGCAGCT
ATCTGTAACTCATCCTTGCTGCAGTAAGTAATTCTTCACTAAAATTCTTT
CAAATGACAACCTTACACATTGAATTGCTTTACAAGGCTGGATTGGATAG
TATACTTTTCCTGGTTTTATTGTTCCTATATGCTGATCTGGTTCCCAGCT
TTTGTGCAACTCTTTAGAGCTGCAGCTGCCTTGAGTTCAACTATGCTCCT
GTCACTAACTCTTCTTCAGAATTTCTCCAACTGACATGGAACACTGCCTT
ATATATCAAAGAAACTGCTTTTAGCAGGTTTGCTTTTTGGAATTTTGTTT
GTTTGTTTTATGGGTGCTATTGTTCTCACATATGCAGTGAATGGACATTT
GTCCACACCTTGCCCAGTGAAGTGAAAGTAATGTCAGAAAGACCTGAGAA
ATATTTTCTAGCTATTGCCCTAGAAAACAATTGCACAGCAAGCTGTTGTA
TCATTAGTTCTAAAATGGAAGTTTTCTTATTTGGAGACATCCAGCAACGG
CTAGAGACATTTTGCATTGCCTGAGCTGATGAAAGTGCGAAAGTGGAATA
GTACCTGGGTGCATTGGTAAAGACCAGGAAGGACTCTGTTTAACAATGAA
TGATAAGAGAGTTCCCGATCATGGAAAGATCCAACTC

ATACAATATACATTCAGGTGCACCAACCTGTGGAGCACGAAGNACCGAGA
ATTACCCCAAACAAGAGAGAGGCGGAGCGCATGCAGATGTGGATATTCCC
CTATAATCTCTATAGATCATCACCGACCGTGACCCACCACTTACGCCCTA
TTCCTATCCTGCCTACTGATCTCAGATCTTTTGCGAACGAATAACAAGAC
AGTCATCTTCTTCCCTCCTGCGCGCTTATGCACTTACCCCACTCTACTCC
CTCCACTATGTTCCTTACATTGCGTTACTGTTCTTTACATTCGAATTACA
TAAACATATCATATGCAGTAGTGCCCGCAGATCATGCTCATTGAATCACC
ATATATAACACTTTGAGAGGCCCTTTGGACTATTGGTGTATTCTTTGAGC
TTCGAGACCTATATTTAATACCGAATATACGTGATCCATTGTGTCGTGCT
CTCTTTAGCGAGTATATACTTACCGCTATACGATACGAAGGGAAGACAAC
GAACGTCAGTAATTAACGCCCTTGATGTCTGTCTATTCTCTACTACATAC
CGACGCTTCCTCTCGAGCTTCATTATATAGTCGACTCCGATCACTACTTA
ATTCTTACTTTATCCCCTCTATCGAATAAAAACTAATATTATATTACGTT
AATTGCCCAGCTGGATACGCGCTTACTTGCTACACATTTCTACGCCCCAA
TACTTTTGCAGCGTACATATTGTCCGTCAACTACCGTTTACACACATATA
TTTCTACATGATATACATACGGCATTCTGATTCACAGAGGCACGGGCGCA
TCAGAGCGCCGCTCATTGGTTAACGTCGCTGTATCACCGCTTTCATTACT
ATGCTTACTCTCCGTATAAGCGATCGTAGACGTATGGTCATCGTACGTCC
ACAGCGTTATGGTTCATATTGTCCACGCTCTATAAGTCTATGTATTACCT
CCATATATATTATATTATATCTTATAATGCGGCGCGCCGTATCGGTGATG
CCCGCTCACGTTGNACGGATCGTCGCTTTACTTGCTAAGTGGACAGTTCC
GCTCATACACTCCACATACCAGTATATGATGTTGATCTATATTCAAGCAT
TAAGATATTGTATATGACGAACGAGCTATGTATTAGTGTACTTCTCCCAG
AGGAGGAACTCTCGGACCTCACTGTAAGCGAACTACCACGCCCCGCTGTG
TCTATGTATTCCTTCGCTATCTTGTTACTCTATACCGCGTCGATTGCTAG
GCTCAACTACACGTGTTAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b16.b1 MSMg01no456_b16.b1 CHROMAT_FILE:
MSMg01no456_b16.b1 PHD_FILE: MSMg01no456_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:48 2005
         (567 letters)



>mm_chr13_27893348_27894314
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctgctgtggaactcctcagagatgcagctatctgtaactcatccttgctgcagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctgctgtggaactcctcagagatgcagctatctgtaactcatccttgctgcagtaag 260

                                                                       
Query: 61  taattcttcactaaaattctttcaaatgacaaccttacacattgaattgctttacaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattcttcactaaaattctttcaaatgacaaccttacacattgaattgctttacaaggc 320

                                                                       
Query: 121 tggattggatagtatacttttcctggttttattgttcctatatgctgatctggttcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggattggatagtatacttttcctggttttattgttcctatatgctgatctggttcccag 380

                                                                       
Query: 181 cttttgtgcaactctttagagctgcagctgccttgagttcaactatgctcctgtcactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cttttgtgcaactctttagagctgcagctgccttgagttcaactatgttcctgtcactaa 440

                                                                       
Query: 241 ctcttcttcagaatttctccaactgacatggaacactgccttatatatcaaagaaactgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttcttcagaatttctccaactgacatggaacactgccttatatatcaaagaaactgc 500

                                                                       
Query: 301 ttttagcaggtttgctttttggaattttgtttgtttgttttatgggtgctattgttctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttagcaggtttgctttttggaattttgtttgtttgttttatgggtgctattgttctca 560

                                                                       
Query: 361 catatgcagtgaatggacatttgtccacaccttgcccagtgaagtgaaagtaatgtcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catatgcagtgaatggacatttgtccacaccttgcccagtgaagtgaaagtaatgtcaga 620

                                                                       
Query: 421 aagacctgagaaatattttctagctattgccctagaaaacaattgcacagcaagctgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagacctgagaaatattttctagctattgccctagaaaacaattgcacagcaagctgttg 680

                                                                       
Query: 481 tatcattagttctaaaatggaagttttcttatttggagacatccagcaacggctagagac 540
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catcattagttctgaaatggaagttttcttatttggagacatccagcaacggctagagac 740

                                      
Query: 541 attttgcattgcctgagctgatgaaag 567
           |||||||||||||||||||||||||||
Sbjct: 741 attttgcattgcctgagctgatgaaag 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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