BAC Information

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BAC

Clone NameMSMg01-456K21
Chromosome13 (Build37)
Map Location 60,413,637 - 60,413,880
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456K21.T7 (MSMg01no456_k21.b1)MSMg01-456K21.TJ (MSMg01no456_k21.g1)
ACCAG542925AG542926
length743818
length of high quality
(start - end)
491 (68 - 558)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no456_k21.b1 PHD_FILE: MSMg01no456_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:35 2005CHROMAT_FILE: MSMg01no456_k21.g1 PHD_FILE: MSMg01no456_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCACCAATATTACACCACAGCCTTATAGAATGGATGCATAAACAGGAT
CCAACATTTGGCTGCATACAAGAAACACATTTCAACAACAATGACAGCCA
CTACTTCAGAATTAAGGGCTGGAAAAAGGTTTTCCAATCAAATGGACCCA
AGAGACAATCTGGAGTAGCCGTTCTAATATCTAATAAAATAGACTTTCAA
CCAAGAGTAATCAAAAGAGATGGGGAAGGACACTTCACATTCATCAAAGG
AAAAGTCCACCATGATGATCTCTCAATTCTGAACATTTGTGCCCCAAATG
CAAGGGCACCCACTGAAAAAATCATAAAAAATTACTGAAGCTTAAATCAC
ATACATATTGAACCCCACACATTAATAGTGGGGAACTTCAATCCTCTACT
CTCACCAATGAACAGGTCATCAAACCAGAAACTAAGCAGGGAAACAATGA
AGCTAGTGGATGTTATGAACCAAATGGACCTAACAGATATCTACATAACC
TCTCATTCAAATACAAAAGAATATTACTTTCTCAGTACCCTACAGAACTT
TCTCCAAAAATGACTCTATAATCTGCCTTACGCAAGGCTCCTCAGAACCA
AAAAGATTGAAAATAATCTGATCCCCCCGGGATCCGAATATTTTAAATTA
ACTAAATTAATTATAATAACGCTGGGCTTCATAACTCCCGAAG
AATACCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTGATTCATGTGGATCT
GTACAGTAAAGACTGGTCTCCATGAGGTCTAGATTACATGGGAGCTTGGT
GGTGACTGATGACAGGTGATCCCTGTCATGTGACCACAATGAACGTGAAG
TCTCTCCTTAGTTCATGATGTGGTTGCCAAGAACCCTTTCGAGTTCCATA
GAAAAACTATCTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGATAGAGAGATTTTTTTTTTTTTNNNNNNNNNNNNGNN
NNNNNNNNNNNTTTTGTCTCCCCGNNTTTTTGTTTGGGGGTTTTNGTGTT
TTTTTTTGTTTGTTTTTTTTGTTCCCCCCCCTTTTTTGTCTTTCTTTTTT
CCTTTTTTCTTTTCTTTTTCCTTCTCCTTGTTTTTTTTCTTCCTCTTTTC
CCTTTGTTGTGTCTTCTTCTCCCTCTTTTTTTTTTCTTTGCTTTTGTTTC
TTCTTCTTTTTTTTTCCCTCTTTTCTTCTTCCTGCTTTCTCGTTTTTCCT
TCCCTCCCTTCTTTCTCTCTGTCTTTTTCTTCTCTCTTCGCCCGTTCTCT
TCCCGTCTTTCTTGTCCTTCTCCGCCCCTNTTGCTTTCTTCTTTCTTTTT
TTCTGTCCCTTGTTCCCTTTGTTCTTCTTTCCTTCTTTTTTTTCTCTTTT
CTTCCTTTTTTCTCTCCTTTTTTTCTTCTCTGTTTCTTGCTCCTGCTCTT
CTCCTCTTTTCCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_k21.g1 MSMg01no456_k21.g1 CHROMAT_FILE:
MSMg01no456_k21.g1 PHD_FILE: MSMg01no456_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:35 2005
         (244 letters)



>mm_chr13_60413543_60414186
          Length = 644

 Score =  321 bits (166), Expect = 2e-92
 Identities = 217/258 (84%), Gaps = 38/258 (14%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtgattcatgtggatctgtacagtaaagactggtctccatgaggtctagattacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttggtgattcatgtggatctgtacagtaaagactggtctccatgaggtctagattacatg 279

                                                                       
Query: 61  ggagcttggtggtgactgatgacaggtgatccctgtcatgtgaccacaatgaacgtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggagcttggtggtgactgatgacaggtgatccctgtcatgtgaccacaatgaacgtgaag 219

                                                                       
Query: 121 tctctccttagttcatgatgtggttgccaagaaccctttcgagttccatagaaaaactat 180
           ||||||||||||||||              ||||||||| ||||||||||||||||||| 
Sbjct: 218 tctctccttagttcat--------------gaacccttttgagttccatagaaaaactag 173

                                                                       
Query: 181 ctc------------------------tgagagagagagagagagagagagagagagaga 216
           |||                        |||||||||||||||||||||||||||||||||
Sbjct: 172 ctctgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagaga 113

                             
Query: 217 gagagagagagagagaga 234
           |||| |||||||||||||
Sbjct: 112 gagaaagagagagagaga 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)