BAC Information

Click to search

BAC

Clone NameMSMg01-456N07
Chromosome13 (Build37)
Map Location 41,618,902 - 41,792,639
singlet/doubletdoublet
Overlap geneEG621976, EG328231
Upstream geneLOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
Downstream gene9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4, Phactr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456N07.T7 (MSMg01no456_n07.b1)MSMg01-456N07.TJ (MSMg01no456_n07.g1)
ACCAG543040AG543041
length761774
length of high quality
(start - end)
386 (68 - 453)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no456_n07.b1 PHD_FILE: MSMg01no456_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:47 2005CHROMAT_FILE: MSMg01no456_n07.g1 PHD_FILE: MSMg01no456_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,618,902 - 41,619,287)(41,792,396 - 41,792,639)
sequence
NAAACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATTTTCCATCCTAGGCCACCAAAGGCTGCAGAGAAGGACC
TGAAGCAGGGTCATGTTCAAAGCCCTCAAAAGGTAGTCCTGTGGAGGCAC
TTTGGTTTGCACTTCTAGTTTCCAGAGCTGTAAAGCAGCATGGGTGTTGT
GTGATCCACTTGGTCATGGAGTCTCCTGTAAGCACCTCTACCATAGTCGC
ATACCTTTGCTTGGTGTTATAAGATTATCCCAGAACCTCCCATACCCTGC
ACACTCATTAGACATTAGGGCAGGTCTGAAAAAGAAAAGCATCATGCCAA
ACGTTCCTCGAACTTCAGGCTGGAGGCTGATAGTTGCAGCAGGTACCCAA
GTGTGAGACCAAAAGCCTCTCCTTGCCATCAAGCCACTGTACTACCTCCT
CTTTGCGTTGGTAAGGCCATACCTAAAGAAGCCCATTTATTCCTGTAATT
AGTCATGTACTGTATTACTGTGATTGCATGCCCTTCTCCGCGGTTCATAG
CACTCTCCTCCTACCCGTGGGCTTTAATACCTCCGTACCCTTTTTAATCC
TCCTCCTATCCCCGGCAGTATTTATTAACTTTCTTCTCTATTAATTTTCA
TCTGGCTTACTTTTGCTTTCTCTCGCAATGTTTCTGTTTTTCCCTTAACT
TTGTTTTCTATTTTCACGCTTAATTTTCTATTCCTCTTTCTTGCGGCCCA
TATTCTCCTTN
TTTCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTCTACAAGGCATCTTGGT
GTCTCTCCCACAAAGGCGCTTGTGATGTGCACCCAGAAGTGAAGCCATCA
GGACGGCCATAGGAAACAGAACACGACTCTCCTCTTCCTCCAGGGTCCAC
TAATTAACTCAATGACCTTGGGGTTGACCTCTCCATGCTCAGGTTTCCTC
ATTTGTAAATGAGGGGCTTGTTGGCTTTCTAAAGCTTCTTCCAGCCATGA
CCTTCCACAATCCTATCAAGAGTATGTACACAGAAAGGAAACCAGCCTTT
TACCCCAAGGACGGGGCTTTTCCGAAGAGCATTATAAATCTGCAGAGTGG
GAGGTCTCCTCCAAGCACTCAGTCCTGCTGTAACTTGGCTGACGGGAGGT
GGCCTGCGGTAGAGATTTTTAGGTACCCCCTTATAGTTTAGTCTTGATTT
CTCCGCTCTCTCTTGTTACTTCCTCGTTTCTTATCCCTCCTTTTTTTTTC
TTACTCTCACCCCTTTTTTCCCCCTTTTTTTCTCTCTCTTTTTTTTCCTC
CTTTATTTTTCTTTTTTTCCCTCCTCTCTCTCTTCCCCTTATTTTTTCTT
TATTACTTTTTATCCCTTTTTTTTTTATCCATTTTTCTTATTATTTTCTC
CCCCTTTCTCTTTTTTTCTTTTTTATTTTTTCATCTCTATATTTTTTATT
TTACCTTCCCCTATTTTTTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_n07.b1 MSMg01no456_n07.b1 CHROMAT_FILE:
MSMg01no456_n07.b1 PHD_FILE: MSMg01no456_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:47 2005
         (386 letters)



>mm_chr13_41618702_41619487
          Length = 786

 Score =  731 bits (378), Expect = 0.0
 Identities = 384/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcctaggccaccaaaggctgcagagaaggacctgaagcagggtcatgttcaaagccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcctaggccaccaaaggctgcagagaaggacctgaagcagggtcatgttcaaagccctc 260

                                                                       
Query: 61  aaaaggtagtcctgtggaggcactttggtttgcacttctagtttccagagctgtaaagca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aaaaggtagtcctgtggaggcactttggtttgcacttctagtctccagagctgtaaagca 320

                                                                       
Query: 121 gcatgggtgttgtgtgatccacttggtcatggagtctcctgtaagcacctctaccatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgggtgttgtgtgatccacttggtcatggagtctcctgtaagcacctctaccatagt 380

                                                                       
Query: 181 cgcatacctttgcttggtgttataagattatcccagaacctcccataccctgcacactca 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatacctttgcttggtgttataagattatcccagaacctcccataccctgcacactca 440

                                                                       
Query: 241 ttagacattagggcaggtctgaaaaagaaaagcatcatgccaaacgttcctcgaacttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagacattagggcaggtctgaaaaagaaaagcatcatgccaaacgttcctcgaacttca 500

                                                                       
Query: 301 ggctggaggctgatagttgcagcaggtacccaagtgtgagaccaaaagcctctccttgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctggaggctgatagttgcagcaggtacccaagtgtgagaccaaaagcctctccttgcc 560

                                     
Query: 361 atcaagccactgtactacctcctctt 386
           ||||||||||||||||||||||||||
Sbjct: 561 atcaagccactgtactacctcctctt 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no456_n07.g1 MSMg01no456_n07.g1 CHROMAT_FILE:
MSMg01no456_n07.g1 PHD_FILE: MSMg01no456_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:47 2005
         (244 letters)



>mm_chr13_41792321_41792964
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcttctacaaggcatcttggtgtctctcccacaaaggcgcttgtgatgtgcacccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttcttctacaaggcatcttggtgtctctcccacaaaggcgcttgtgatgtgcacccaga 260

                                                                       
Query: 61  agtgaagccatcaggacggccataggaaacagaacacgactctcctcttcctccagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agtgaagccatcaggacggccataggaaacagaacacgactctcctcttcctccagggtc 200

                                                                       
Query: 121 cactaattaactcaatgaccttggggttgacctctccatgctcaggtttcctcatttgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 cactaattaactcaatgaccttggggttgacctctccatgctcaggtttcctcatttgta 140

                                                                       
Query: 181 aatgaggggcttgttggctttctaaagcttcttccagccatgaccttccacaatcctatc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 139 aatgaggggcttgttggctttctaaagtttcttccagccatgaccttccacaatcctatc 80

               
Query: 241 aaga 244
           ||||
Sbjct: 79  aaga 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)