Query= MSMg01no456_o19.b1 MSMg01no456_o19.b1 CHROMAT_FILE:
MSMg01no456_o19.b1 PHD_FILE: MSMg01no456_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:55 2005
(337 letters)
>mm_chr13_41365880_41366616
Length = 737
Score = 551 bits (285), Expect = e-161
Identities = 330/359 (91%), Gaps = 22/359 (6%)
Strand = Plus / Minus
Query: 1 aacaccttgaatatttttggtcaactatatgcatagatgtcccagctttgtaaaataata 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 428 aacaccttgaatatttttggtcaactatatgcataaatgtcccagctttgtaaaataata 369
Query: 61 ttttgataatattcccaattaacatgctctgttttcacccaaaattctctgctgcatagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttgataatattcccaattaacatgctctgttttcacccaaaattctctgctgcatagg 309
Query: 121 tggagctattagagaaagaccaccggaaagggggaccccacttctgacccaaagcataga 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 308 tggagctattagagaaagaccaccggaaagggggaccccatttctgacccaaagcacaga 249
Query: 181 aagctacagttgaggactggaggaagagccacctaggtgcctgt---------------- 224
||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 248 aagctgcacttgaggactggaggaagagccacctaggtgcctgtcactgacaagggtaac 189
Query: 225 ------cactcacctgacaggaattcttatgctaacagggcagggaaatctgacgtaact 278
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 188 agaaaccactcacctgacaggaattcaaatgctaacagggcagggaaatctgacgtaact 129
Query: 279 tttgttttttcaaattatatttttatagatatgattcacatatcaaatttgaagtatac 337
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tttgttttttcaaattatatttttatagatatgattcacatatcaaatttgaagtatac 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space: 238784
Effective search space used: 238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_o19.g1 MSMg01no456_o19.g1 CHROMAT_FILE:
MSMg01no456_o19.g1 PHD_FILE: MSMg01no456_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:55 2005
(342 letters)
>mm_chr13_41189248_41189991
Length = 744
Score = 536 bits (277), Expect = e-157
Identities = 325/341 (95%), Gaps = 2/341 (0%)
Strand = Plus / Plus
Query: 1 ccatgaacacatgaagaataggattgaaggactttagactctccacctctctagactcca 60
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ccatgaacacaggaagaataggattgaaggactttagactcaccacctctctagactcca 260
Query: 61 ttaagtagcaaaggactatttatatagaggtgattgttttattccaggaaacccaaagaa 120
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 261 ttaagtggcaaaggactatttatatagaggcgattgttttattccgggaaacccaaagaa 320
Query: 121 ttcacattttaaaaa-tcgaaataaaaaa-tatagtgagatgccatatcttgggcacgga 178
||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 321 ttcacatttaaaaaaatcgaaataaaaaaatatagtgagatgccatatcttggacacgga 380
Query: 179 ctttgtgtgattttataattgtgcaccacagcctgggtcagcatgcagattgttcacagt 238
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgtgagattttataattgtgcaccacagcctgggtcagcatgcagattgttcacagt 440
Query: 239 cttcttatttccttggagccaagagcagccaggtacttaacttgtatccatggtaaccct 298
| || | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cccctgacatccttggagccaagagcagccaggtccttaacttgtatccatggtaaccct 500
Query: 299 ctgcatactctcacaaaactcaactatgaagtctgtgctct 339
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcatactctcacaaaactcaactatgaagtctgtgctct 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 744
Length adjustment: 9
Effective length of query: 333
Effective length of database: 735
Effective search space: 244755
Effective search space used: 244755
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
