BAC Information

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BAC

Clone NameMSMg01-457D12
Chromosome13 (Build37)
Map Location 21,103,943 - 21,104,186
singlet/doubletsinglet
Overlap geneAoah
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457D12.T7 (MSMg01no457_d12.b1)MSMg01-457D12.TJ (MSMg01no457_d12.g1)
ACCAG543337AG543338
length959733
length of high quality
(start - end)
---244 (86 - 329)
definitionCHROMAT_FILE: MSMg01no457_d12.b1 PHD_FILE: MSMg01no457_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:21 2005CHROMAT_FILE: MSMg01no457_d12.g1 PHD_FILE: MSMg01no457_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGAGAAAGTGGCCGCCCCATCATACTTGTACTTATTTCATAATATGGG
GTGTTTATTCTTCTTTTTTTCTTGTCTCTCTTCTTTTGCGCTCTGTGAGC
TTGTTTATTTAAAATTTACTCTTTATTTCTCACTTATTATTTCTTCCTCA
CCCTGGTCTACCCGATTTGTGCTTTTGTGTGTCTGATGTCTCTTTTTACT
TTTGTTGTTCGCGGTGTTGGTTGTTATTGGTGGCGGGACTCCTGGTGTTG
GTGCTTTTATCTATCTCTTTTTGCTGTGCTCTCTCTATGTTTTCTTTTTC
TTTACTTCTCTTTTCCTTTGTTTATTTTTTGATTAGTTTCTGTTTGTCGT
CTTGCTTTTCTTCCTCTGTTATTTTTCTTATATTTTGTTGTTGTAACTTA
TTGACGGGTATTCTTGTTCGCTTGTTTCTTTCTACTTTCTCACTTCCTTT
ACATTCTTTAACGGGTACTATTTATTAGTATGCAAGTAATTTTGTTGATT
ATCATGGCTTGCTTGTAGTTTTGGTATTATGTTGTGGAAGGTCTTATTTT
ATTTCGATATAAGTGTCTAGTGCTCTTCTTTGATGTTTTGTATGGTGTTT
TCACAATGTGAGTACGTATTTTTTTTCTCCCTTGTTATTAATTTTGTATA
GTAACTTATTTATTAGTAACTTTTGTGTTTTTCTGTTGTTTCTATTTCGT
GTTGTGCCGTTGTTTCGTGGTGGGTTGGTCGTATGCTTATATAATTTGTA
GCGTTCTTTATTGATGTTTACTTATTGCGTGACCTTTGTTTGCTGCCGAT
GAGATGGTCCGTGGTGTATATCTCTCACTTTGTTTTTGTCTACCTTAGGT
TCTCTATAGTGTGTTGATTCTTTCTGGTTCTTCTTATTTTTATGTTCTAT
CAAGTTGTCTTACATTATACCTCTGTTTTACTATATATTTTTACCATGCT
AGTATTGCN
TTTATTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGACAGTCTCTC
AATTCTTCCCTGGGTTAAGGAGATGAGAATGGCATAGTCCTTTGGCCTTG
AGATTGGGGAGACTTAGAGAAAGGTGTGTAAAGAAAAATTGGAATCATAG
CTGCACATCTGGTTTCTATGAACACTAGGAAAGTGAGATGTTCCACCAGG
AGCAGAAGTTTCTGATGGTTCTGTATGAAGGCTCTCTAGGGACTGCAATT
TCCATGAGGAAGTTTTACTGGCTTTGTGATATTTTTCATAGAATTAATTG
CACAGCTGCCTTGGAGGATCTGACATGCACAGTGTCTTATCCCTGTTGAC
GGACAGTTTTATTACTTTTCATCACCTTGGGGCTCATAATATTTTCTCTG
TAACCATGCTCTCTCTAAATGCCAAGTTGAGAATATTTTACGCATTATAT
TTCCGGACCCCCGTGGTGTTGGTCCGAGTTGATGCTTGACCCTAATTTTC
CCCTTCTGTACTGGCTCCTGGTTTTTTATGTCCTTTTCTCATTGCTACCC
TCTGTCTCGTATTAGACCTGTTCCTTTTTATCACCTTATTTTCTAGTTGC
CCTACTTTTTTTTTTTTTTTTTCTCGCCCACCCATTCTTCCTCCTTTTTC
CCTTTTCCTATTTTCCTTTTCTTCCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_d12.g1 MSMg01no457_d12.g1 CHROMAT_FILE:
MSMg01no457_d12.g1 PHD_FILE: MSMg01no457_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:21 2005
         (244 letters)



>mm_chr13_21103743_21104386
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagacagtctctcaattcttccctgggttaaggagatgagaatggcatagtcctttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagacagtctctcaattcttccctgggttaaggagatgagaatggcatagtcctttgg 260

                                                                       
Query: 61  ccttgagattggggagacttagagaaaggtgtgtaaagaaaaattggaatcatagctgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ccttgagattggggagacttagagaaaggtgtgtaaagaaaaattggaatcatagctaca 320

                                                                       
Query: 121 catctggtttctatgaacactaggaaagtgagatgttccaccaggagcagaagtttctga 180
           || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 cagctggcttctatgaacactaggaaagtgagatgtttcaccaggagcagaagtttctga 380

                                                                       
Query: 181 tggttctgtatgaaggctctctagggactgcaatttccatgaggaagttttactggcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttctgtatgaaggctctctagggactgcaatttccatgaggaagttttactggcttt 440

               
Query: 241 gtga 244
           ||||
Sbjct: 441 gtga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)