BAC Information

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BAC

Clone NameMSMg01-457J08
Chromosome13 (Build37)
Map Location 71,821,659 - 71,822,049
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts16, 8030423J24Rik, LOC627230, LOC100042360
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457J08.T7 (MSMg01no457_j08.b1)MSMg01-457J08.TJ (MSMg01no457_j08.g1)
ACCAG543615AG543616
length764786
length of high quality
(start - end)
418 (48 - 465)391 (82 - 472)
definitionCHROMAT_FILE: MSMg01no457_j08.b1 PHD_FILE: MSMg01no457_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:50 2005CHROMAT_FILE: MSMg01no457_j08.g1 PHD_FILE: MSMg01no457_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTATCTTGTGACTAAAGTTACTTCTAGAATGTCCCCAAGAGAA
AAGCTTCATGTGACACTGCACATCTTTATGCTATTAGTTTGGTAGGGTTG
CCTTAACAAACTGTCACAGACTAGACACTTTTAACAGTAGGAATGTGTGT
CCTGATTCCTGGGGAAGTTGGTTATCTCATCAGTGAGATGGAGCCCAGTA
AAGCCTCACTCCAGAACCAGCACATGATGTCTTCTTCTGTGCCTCACAAG
CTTGTCTTCCCTGTGTGTATTTGTGTCCTGATGAGTGAGGATAAGTTAGC
TCACCCTACTGTGACTGTTGTGTTCCTTATGTTCCTTCACATCTTATATC
ATAGAAGGCTAGTCTGACTCCATGACAAGCTTCAAATTGGCAGTTTTTAG
GAGACTAAGAGAAGCCCAGGCAAGACAATTACCAATACAACAACAACCAC
TGCTGCTACTGCTACTGCTACTGCTATTGCTACTGGTACTGTTACTGGTA
CTGGTACTGCTACTGCAACTGTTACTGGCAATGCGAAGGGTTACTGGTAC
TGTTACTGGTATTGGGTATTGTTAATGGGNATGGTTTCTGGGTTTTTGCA
CTGGTTTACCTCTTTTTTTCCTCATATCTCTTTCTACTATAAACCTGTCT
TTTTTTTTCTCCTGTCNCCTTTTTTTGTTTTCTTCTTTTCCTCTCCCTTC
TCCAAATTATATCA
NNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTGACTTCATTTGA
TGATGAACAGCAATGTGTAAATGTAAGGTGAATAAACCCTTTCATCCCCA
ACTTGCTTCTTGGTCATGATGTTTGTGCAGGACCCTGACTAAGACACAGG
TCCTCAGCTGGTGTCCATGCAGGAGAGAATACGTATCTAACACAGATGAA
AGGGAGTCACTGGGGAGAACTAGTGAGAGGAAAATTCCAATATAACAGAT
GTCTAGGTGAAAGTGTGGAGGTTCTATCTGTTGAATTATGAATGCTGACA
TGATTATCATAGCATTTTTTCAATCTTCTAGAAAGACACAGCTTTATGAT
GTCCAAAGCCATAGGAGGAGACTCTTCAGTCAGCTATCGTGATCTGAACT
GTAGAATAGAGAAAGAGAAACATATTTGGTAGTGAGGGGTACAAGATTGA
GTTTAACTACTGAGGCTAGGAGTACTGGCTAAGTGTTGGCTGGCACGTAA
TTATAAAATTTTGTTTGTNTAGGTATTATTGTGAACCCCCATCTATTTAT
TCTGGCCTTTTGTCTCATTAATTCTAATCATACTATTGTTTCTCTCTCTG
TTGTTTTTTCCCCTCCCTTGCTTTCTTTATTTGTTCTCTCCTAATCGCGT
CTGTTACCCTTTTCCAACCTTCTACTTTTATTTTCTCCTTTTTACTTCTT
TCTTTTTCTCTTCCTTTCCATTTCCTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_j08.g1 MSMg01no457_j08.g1 CHROMAT_FILE:
MSMg01no457_j08.g1 PHD_FILE: MSMg01no457_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:50 2005
         (391 letters)



>mm_chr13_71821344_71822134
          Length = 791

 Score =  717 bits (371), Expect = 0.0
 Identities = 386/391 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcctgacttcatttgatgatgaacagcaatgtgtaaatgtaaggtgaataaaccctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 706 cagtcctgacttcatttgatgatgaacagcaatgtgtaaatgtaaggtgaataaactctt 647

                                                                       
Query: 61  tcatccccaacttgcttcttggtcatgatgtttgtgcaggaccctgactaagacacaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tcatccccaacttgcttcttggtcatgatgtttgtgcaggaccctgactaagacacaggt 587

                                                                       
Query: 121 cctcagctggtgtccatgcaggagagaatacgtatctaacacagatgaaagggagtcact 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 586 cctcagctggtgtccatgcaggagagaatacgtatctaatacagatgaaagggagtcact 527

                                                                       
Query: 181 ggggagaactagtgagaggaaaattccaatataacagatgtctaggtgaaagtgtggagg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggggagaactagtgagaggaagattccaatataacagatgtctaggtgaaagtgtggagg 467

                                                                       
Query: 241 ttctatctgttgaattatgaatgctgacatgattatcatagcattttttcaatcttctag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttctagctgttgaattatgaatgctgacatgattatcatagcattttttcaatcttctag 407

                                                                       
Query: 301 aaagacacagctttatgatgtccaaagccataggaggagactcttcagtcagctatcgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaagacacagctttatgatgtccaaagccataggaggagactcttcagtcagctatcgtg 347

                                          
Query: 361 atctgaactgtagaatagagaaagagaaaca 391
           ||||||| |||||||||||||||||||||||
Sbjct: 346 atctgaaatgtagaatagagaaagagaaaca 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)