Query= MSMg01no457_j23.b1 MSMg01no457_j23.b1 CHROMAT_FILE:
MSMg01no457_j23.b1 PHD_FILE: MSMg01no457_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:54 2005
(275 letters)
>mm_chr13_36206668_36207342
Length = 675
Score = 487 bits (252), Expect = e-142
Identities = 267/272 (98%), Gaps = 2/272 (0%)
Strand = Plus / Plus
Query: 5 gaattctata-ggttttctgtaaaggcagtcttattttatacgacactagttttatttca 63
|||||||||| ||| || ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 205 gaattctatagggtatt-tgtaaaggcagtcttattttatatgacgctagttttatttca 263
Query: 64 tgggacataatgctggcagggttcacagggtttcgatacatggtatctggaaaaggagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgggacataatgctggcagggttcacagggtttcgatacatggtatctggaaaaggagag 323
Query: 124 cacctgattcctgtggaaattacatctgtgtgaggcacagactactctctgcgtgcgtgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacctgattcctgtggaaattacatctgtgtgaggcacagactactctctgcgtgcgtgt 383
Query: 184 cagcacacagctgcttgtgttgaagctcagtctcaattttctgtgaggcacagcctacct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagcacacagctgcttgtgttgaagctcagtctcaattttctgtgaggcacagcctacct 443
Query: 244 ttctgtattggctcttaagtcacttccagatg 275
||||||||||||||||||||||||||||||||
Sbjct: 444 ttctgtattggctcttaagtcacttccagatg 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no457_j23.g1 MSMg01no457_j23.g1 CHROMAT_FILE:
MSMg01no457_j23.g1 PHD_FILE: MSMg01no457_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:54 2005
(402 letters)
>mm_chr13_36386107_36386908
Length = 802
Score = 770 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Minus
Query: 1 caagcctctcttcaacctcatgcttcccaacagtgaatggcaagatatggaacagcgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caagcctctcttcaacctcatgcttcccaacagtgaatggcaagatatggaacagcgtgg 543
Query: 61 caagaacgggaactaggcgccacagagctcttcatgcctcatcgtacttgactgagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caagaacgggaactaggcgccacagagctcttcatgcctcatcgtacttgactgagttca 483
Query: 121 acacaggcaccagtcatacagcccctagttcatcaaatctaacaacacttatcataactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acacaggcaccagtcatacagcccctagttcatcaaatctaacaacacttatcataactg 423
Query: 181 ccttagggaagaaaattctggcaaaataactgggagatgatgtggaacaaataataaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccttagggaagaaaattctggcaaaataactgggagatgatgtggaacaaataataaaac 363
Query: 241 ccaatccagaaatacaaaccctgggcaggttaggtgttgctagatcgtttgaactgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccaatccagaaatacaaaccctgggcaggttaggtgttgctagatcgtttgaactgtgtt 303
Query: 301 atattgcaagctaattccaagggagaagtggccagtgtttccttggctttgctccctctc 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atattgcaagctaattccaagagagaagtggccagtgtttccttggctttgctccctctc 243
Query: 361 acttcataaagcatagtcatctctctggaacaaccatttccc 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acttcataaagcatagtcatctctctggaacaaccatttccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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