BAC Information

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BAC

Clone NameMSMg01-457N18
Chromosome13 (Build37)
Map Location 13,191,801 - 13,192,186
singlet/doubletsinglet
Overlap geneLOC434483
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2
Downstream geneLOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457N18.T7 (MSMg01no457_n18.b1)MSMg01-457N18.TJ (MSMg01no457_n18.g1)
ACCAG543826AG543827
length751768
length of high quality
(start - end)		431 (51 - 481)386 (81 - 466)
definitionCHROMAT_FILE: MSMg01no457_n18.b1 PHD_FILE: MSMg01no457_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:14 2005CHROMAT_FILE: MSMg01no457_n18.g1 PHD_FILE: MSMg01no457_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTAAAGTCTTTGTAATCTCACAAAATTGTGCCGTTCTC
CTTGTCCTATTTTTCAGTAGCATGTGCTTTCTTTTTTTCTATGAAACTTG
TATTGTCAGAAATATACTAGATCTCTTCTGAAATATACTAGAATCATTGG
CTGAAGACATCAGAAATAAGTGAGATACTTACAAATATCATGCGCATTTC
TATAGTGAGAGCCATGGTGTCATTTGACAGTTTGATGGCTTGATCAAACA
AGTCTTTGAGGTATGCCTCACCATAGTCATCCTCATTGTGGTGAATGGAA
GCAGAAGTCACACCCTCCCACTAGAGTACGTTTGACATCAACAACATTGG
AAGTATTCCTATTGTATAGAAACACAAGTTACATTGGATTACCTATCTCA
GGTTATCAGTGGTAATTCTTCTTTAGTTATCAAAAAAAATATTTTTCCAT
TGCCTGCTACCATCGGGTCTGTCACTGTACAGATGTGGTAGTGAATATAC
NATTTCTAATAAAAAACTTCCATTAAATAATTACATTCATACAAGTTACT
AAACTTGAAGACTTTATCTGCTGTGGATTATCGAAATTATTCTGAAATTT
TGGTTCTTAAATTAATGAGAGGTTTTTAAGCCTTTCTTGGAGACAGAATA
AAATAATTGGAAATTTGGCGGGCTTTAAAAAGCCCCCCTCTCCCCCCAAC
G

NNNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATCCTGGTAGCTTTAT
TACTGGAATCTGGCAAGCAGCTGTATAGCAATGGGGTGGTGACACCATGG
AGTGTAACTTCATCTGTTTGACAACGGCATTAGCAAAATAAATTTTATCT
TGACTTTTATTACTAAAACTTCATTTAACATTTCTGCACAACATAGCAAA
AAAGTTTAAAATAAATACTTAAATAGGCCCAAGGTAAATTTGGAAATAAG
AGTAGGGGACTCATTGGACTGAAAAGTCATCCAAAGACCATGCACGGATG
GACCGAGCCCCTTTACACATATGTAACAGATGTGCAGTTTTTCTTCATGT
GAGTTCCCTAATAATTAGAGTTGGGGCTGTCTCTGACACTGTTGCCTGCC
TTTGGACTTCTTGCACTAGCTGGGCTCANTAGGAGAAGATACATCTAGNC
TTGCTGATGATTGTTGTGGCAAGAACAGTTGGTACTCATTTCCCCGAGGA
AAAGGGAAAAGAGAAGTGGAGATGGTTAGTTTTGAAGGGGGGNCTCCNNG
GGAANGGGGGTTTTCTTTTGTTGTGTNGGGGGTNNNTTTTTTTTTGGGGN
NGGTTNNAAATTTTTTNTTTTCTCTNTTTTTTTTTTNNTTTTNNNNNGGN
TTTTCTTTTTTTNNGGGGTTTNNNNNTNNNTTTTTGTNNNNTGTNTTTGT
GTGGTTNNTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_n18.g1 MSMg01no457_n18.g1 CHROMAT_FILE:
MSMg01no457_n18.g1 PHD_FILE: MSMg01no457_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:14 2005
         (386 letters)



>mm_chr13_13191601_13192386
          Length = 786

 Score =  739 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaatcctggtagctttattactggaatctggcaagcagctgtatagcaatggggtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaatcctggtagctttattactggaatctggcaagcagctgtatagcaatggggtggt 260

                                                                       
Query: 61  gacaccatggagtgtaacttcatctgtttgacaacggcattagcaaaataaattttatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaccatggagtgtaacttcatctgtttgacaacggcattagcaaaataaattttatct 320

                                                                       
Query: 121 tgacttttattactaaaacttcatttaacatttctgcacaacatagcaaaaaagtttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacttttattactaaaacttcatttaacatttctgcacaacatagcaaaaaagtttaaa 380

                                                                       
Query: 181 ataaatacttaaataggcccaaggtaaatttggaaataagagtaggggactcattggact 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatacttaaataggcccagggtaaatttggaaataagagtaggggactcattggact 440

                                                                       
Query: 241 gaaaagtcatccaaagaccatgcacggatggaccgagcccctttacacatatgtaacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaagtcatccaaagaccatgcacggatggaccgagcccctttacacatatgtaacaga 500

                                                                       
Query: 301 tgtgcagtttttcttcatgtgagttccctaataattagagttggggctgtctctgacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcagtttttcttcatgtgagttccctaataattagagttggggctgtctctgacact 560

                                     
Query: 361 gttgcctgcctttggacttcttgcac 386
           ||||||||||||||||||||||||||
Sbjct: 561 gttgcctgcctttggacttcttgcac 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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