BAC Information

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BAC

Clone NameMSMg01-458O10
Chromosome13 (Build37)
Map Location 90,878,564 - 90,878,737
singlet/doubletsinglet
Overlap genenone
Upstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O10.T7 (MSMg01no458_o10.b1)MSMg01-458O10.TJ (MSMg01no458_o10.g1)
ACCAG544622AG544623
length836750
length of high quality
(start - end)
141 (81 - 221)174 (79 - 252)
definitionCHROMAT_FILE: MSMg01no458_o10.b1 PHD_FILE: MSMg01no458_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:37 2005CHROMAT_FILE: MSMg01no458_o10.g1 PHD_FILE: MSMg01no458_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCATGAGCAGGCG
CNGGAATCCACTGGTTACAGAACAGATGAGGTTTATTTCTGTAGGCTTTA
AAAGTGAAAGTTTCTAATTCATTCTACCAAGGAAGAAGAGAAGGAAGGAA
AGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGAGAAGGAAGGAAGGAAAA
AAGGAAGGAAGGAAGGAAGGAAGAAAGTAAGGATGTTTGTGTATAGAGGG
CAGATTTTTTTTTTGGGGGGGGGGAGGGCGGCGCTCCTACTTCCTGTCGT
CTCGACCAAGCCCGGCGGAGACTTTGCCTCCCTTTGAACGGGCAGCAGGG
GAGGGGGGGAAGCAGGTTTTTTTCCCCCCCTCTTTTTTATGGGGTGTGTT
CTTTTTATCAAATTTTTTTCTTTTTTCCCCCCCGTTTTTTCTTTTTTCAA
CTCGCCTATTCTCTCTACTTAATGTCCTAATCCTCTTTTTTCTTCATTTC
TTCACTTTTTTTGAGTCTTATTAACCATCTTTATTGAACTCCATATTTTC
ATTTGCTTTGTTTAGTTAATTGACTACTGTCGCCTCGGGCCACTCTTCGG
TTCATATTCTGCTCGGTCGGAATCTCTGGTGTTCTCCTCACGCCGCTCCT
CTTTCTCGCCATATTTTCTCACTCTTCTTTGTCTCCTCCTCCTTATCTCT
CCCTTTCTTGTCATGCACGCATGTATGCGACCCTTTTTTTTTTTTTTCTT
TTGCGTTAGACGCCTCCTTTTCTATAGTCTATCCTGCCGGCCACACGTTG
TTTTGACCTATCACACGCCTCATCCCTCGTTACTCN
ACGAATGAAAGGGGTAGGCCTGGGGGNCGCCTGGTTTCATACCTGGAGGN
NGAACNANAGAAGGTTACANATACATCTGCCTCCTACAGCAACAGAAAGG
GGGAGAAAAGTAGCTTTGATTTTCTCCACAATGACTTAGTAGGAATGGCC
AAACTTAGTAGGAATGGTTGCTTAAATATCTAACTGTGAATGTATTGAGC
AGCTCTAGATGTCATTGCATGAGAGTTAGGTTTTTCAAAGTGAATATTAA
AAAGTATAGTAGTGGGATGGATAACACCTAAGCCAGCAGAGACAATCAAT
AAAAGTCAGTCGGCACAACTTAACATCGTTTAGGGGAGGCTGCACAAAGA
AAATACAGGGTACTAAGTGCGCACGGGAAAATGATAGAAATCAATCAAAG
TCCATCAAGAATAAATAGACTACTAAAAAGGATTGCTGACTGGCTTAAAA
GAGCCAAATTGTCCTCTATAATCTTTAGAATAGTATGGACACATCTGAAA
TGTCAGAATAGAGATTGAATTTAAATGAATGAAGAAAGATCTACTGGGAT
AATACAAACCAAAAGAAAACCTGGATATGTTTACTAATGTCAAAATGAGT
GGTGTTTAATACTCAAAGTTAGTACAAACTAAAAATGACTATTGTGCACT
ATGATAGATGGTTATTTTTTCTAAGAACTCTTCTAAACCAGCACACTATG
CCATGGTCTCTAACACTATATATCATTGATGTCTGGCCAGATGCTCTAAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o10.g1 MSMg01no458_o10.g1 CHROMAT_FILE:
MSMg01no458_o10.g1 PHD_FILE: MSMg01no458_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:37 2005
         (174 letters)



>mm_chr13_90878364_90878937
          Length = 574

 Score =  290 bits (150), Expect = 3e-83
 Identities = 168/178 (94%), Gaps = 8/178 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctcctacagcaacagaaagggggagaaaagtagctttgatttt----ctccacaatga 56
           |||||||||||||||||||||||||||||||||||||||||        ||  |||||||
Sbjct: 201 gcctcctacagcaacagaaagggggagaaaagtagctttga----gcaactgaacaatga 256

                                                                       
Query: 57  cttagtaggaatggccaaacttagtaggaatggttgcttaaatatctaactgtgaatgta 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cttagtaggaatggccaaacttagtaggaatggttgcttaaatatctaactgtgaatgta 316

                                                                     
Query: 117 ttgagcagctctagatgtcattgcatgagagttaggtttttcaaagtgaatattaaaa 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgagcagctctagatgtcattgcatgagagttaggtttttcaaagtgaatattaaaa 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)