BAC Information

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BAC

Clone NameMSMg01-459L01
Chromosome13 (Build37)
Map Location 64,270,721 - 64,423,267
singlet/doubletdoublet
Overlap geneHabp4, Cdc14b, 1110018J18Rik
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367
Downstream geneCtsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459L01.T7 (MSMg01no459_l01.b1)MSMg01-459L01.TJ (MSMg01no459_l01.g1)
ACCAG545223AG545224
length741779
length of high quality
(start - end)		477 (66 - 542)232 (72 - 303)
definitionCHROMAT_FILE: MSMg01no459_l01.b1 PHD_FILE: MSMg01no459_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:42 2005CHROMAT_FILE: MSMg01no459_l01.g1 PHD_FILE: MSMg01no459_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,422,794 - 64,423,267)(64,270,721 - 64,270,949)
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGATTTCCTATCTGAGGATAAATCTTTCTTACAAAAGAGTCATC
CATTCGACCCATGAAGACTTTGACAGGAAAAAGCTCTTCCAAGTCTGTAA
GAAAACAGTTCTTGGTGTCAGTACATGTACAGAAAAAACAGGATTCAGCA
GGAGAAACCATATTACTGACTATGAATATTTGAAAAGCTTTGTTCTAAGG
CTACCTGCAGAATATATCAAAAGAATTCACAGATGCTTCTGGCTCTATGA
AAACTCCTTTTATATGAAATCGTATCTTGTTAGATAAGGCTCACAAATCA
CAGCCTGGTATTCTGTTCGTAAGTCATAATTTCATTTTTCCTCCAAGCAA
TAGCAACTCCAGAATTTCCAGTCTCCAGTTTATGTAAGCCTCACTCTGTG
ACTGACTGCTAGAACCGGGTGCCTACGATTTATGACATAACCAGGCCTGA
CAAATACAAGATTCCCCTGAGATATGACAGGGCCCTTCATAATAGAACAA
GTATGAGCACCCCAGGGAAGGCGTATCTGATAATAAGAACTTGCCACAGA
AGCCTAATAGCTTGAGTTAGATCTCCAGAAACCACGTAGATGAATGATAT
GGTGGCTAGGATCTGTCATCCCAGGATTCCTACTGTGTGCGAAATGGTAT
CTGGAAAAAGTGAAATTTTCTAAAGGGTCATCTACCTTGAT

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCAGAGATCCATCTGCCTCTGCCTCTG
CCTCCTGCGGCCTGGGATGAAAGGCATGGGCCGCATCTGGGTGCATGCTG
GGATTCTAAAAGTGTAGTCTGAAGTGCAGCTTTTATCCTTTAATTTCCTT
AGTCGGACTTTACCACTATTACTGGTTAAGCGGTTTGTGAAATGCCATCC
ATCCTAAATGTACCTAACTGCAGTTACGGAGGCACTGGGGGGGGGGAGTG
NAAGNNNNNNTTTTTTTTTTTGTTTNTTTTTGNNNTNTGTGGTTTTTTGT
CGGGTCCGTCTCTGTCTCCTTTGCGTTTTTCTTTCCTCTTGCCCCTTGTC
TCCTTTTCCCCCCCTCTTTTTTTTTTTTGTTCTCGTCCTTTCTGTTTGTT
TTTCGTCTCCTTCTCCTCCGTCCTCCTCCTTCTTCCCCTCTTCCCCCGCT
CCCTTTTGCTCTTCTCTCGTTCTCCCGTTTTTTTTTCTCTTGCTTCTCCT
CCTGTCTTCTTTTCTCGCTTTTTCTGGTCTTTCTTTCTCTCCCTCTCCCT
CCCGTCGGTNTTTTTTTTGTCTTTTTTTTTCTCTCTCCCTTTTTTTCTTT
TTCGTCCCCTCTTTTTTCTTCGTCTCCCCCTATCCTCTTTCCTCCTCTTT
CTTCCTTCTCCCTTTTCTTCTCCCTCCTCCGCCCCCCCTCTCTCTTTCTC
CTCCGCCTTTTTCCGCTCTATTTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_l01.b1 MSMg01no459_l01.b1 CHROMAT_FILE:
MSMg01no459_l01.b1 PHD_FILE: MSMg01no459_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:42 2005
         (477 letters)



>mm_chr13_64422594_64423470
          Length = 877

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgaggataaatctttcttacaaaagagtcatccattcgacccatgaagactttgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atctgaggataaatctttcttacaaaagagtcatccattcgacccatgaagactttgaca 615

                                                                       
Query: 61  ggaaaaagctcttccaagtctgtaagaaaacagttcttggtgtcagtacatgtacagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ggaaaaagctcttccaagtctgtaagaaaacagttcttggtgtcagtacatgtacagaaa 555

                                                                       
Query: 121 aaacaggattcagcaggagaaaccatattactgactatgaatatttgaaaagctttgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aaacaggattcagcaggagaaaccatattactgactatgaatatttgaaaagctttgttc 495

                                                                       
Query: 181 taaggctacctgcagaatatatcaaaagaattcacagatgcttctggctctatgaaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taaggctacctgcagaatatatcaaaagaattcacagatgcttctggctctatgaaaact 435

                                                                       
Query: 241 ccttttatatgaaatcgtatcttgttagataaggctcacaaatcacagcctggtattctg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccttttatatgaaaccgtatcttgttagataaggctcacaaatcacagcctggtattctg 375

                                                                       
Query: 301 ttcgtaagtcataatttcatttttcctccaagcaatagcaactccagaatttccagtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttcgtaagtcataatttcatttttcctccaagcaatagcaactccagaatttccagtctc 315

                                                                       
Query: 361 cagtttatgtaagcctcactctgtgactgactgctagaaccgggtgcctacgatttatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagtttatgtaagcctcactctgtgactgactgctagaaccgggtgcctacgatttatga 255

                                                                 
Query: 421 cataaccaggcctgacaaatacaagattcccctgagatatgacagggcccttca 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cataaccaggcctgacaaatacaagattcccctgagatatgacagggcccttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_l01.g1 MSMg01no459_l01.g1 CHROMAT_FILE:
MSMg01no459_l01.g1 PHD_FILE: MSMg01no459_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:42 2005
         (232 letters)



>mm_chr13_64270521_64271152
          Length = 632

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcagagatccatctgcctctgcctctgcctcctgcggcctgggatgaaaggcatgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcagagatccatctgcctctgcctctgcctcctgcggcctgggatgaaaggcatgggc 260

                                                                       
Query: 61  cgcatctgggtgcatgctgggattctaaaagtgtagtctgaagtgcagcttttatccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcatctgggtgcatgctgggattctaaaagtgtagtctgaagtgcagcttttatccttt 320

                                                                       
Query: 121 aatttccttagtcggactttaccactattactggttaagcggtttgtgaaatgccatcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttccttagtcggactttaccactattactggttaagcggtttgtgaaatgccatcca 380

                                                            
Query: 181 tcctaaatgtacctaactgcagttacggaggcactggggggggggagtg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctaaatgtacctaactgcagttacggaggcactggggggggggagtg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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