BAC Information

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BAC

Clone NameMSMg01-459M05
Chromosome13 (Build37)
Map Location 114,885,215 - 114,885,618
singlet/doubletsinglet
Overlap geneArl15
Upstream geneGzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneA430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459M05.T7 (MSMg01no459_m05.b1)MSMg01-459M05.TJ (MSMg01no459_m05.g1)
ACCAG545279AG545280
length762777
length of high quality
(start - end)
240 (72 - 311)404 (76 - 479)
definitionCHROMAT_FILE: MSMg01no459_m05.b1 PHD_FILE: MSMg01no459_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:48 2005CHROMAT_FILE: MSMg01no459_m05.g1 PHD_FILE: MSMg01no459_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGACGAGGATCCGCGGA
ATTCCAAGCTTCAAAAACGGCTTCAGGACTGCCTAGGACATTGGTGAAGA
CCAGGGAGTAAAATTCAACCTGATTAAAGTATTTGTAAAATCATCACTTG
GAAGAACCTATAATACAAGAAAGCACACAGATCCATACACTAGATTAACG
CGGGGACAGGGTTTGAGTATATGGGCTATGGGAATGCCAAGGTTCCAGGA
GGCTAAGTTTCCATGAAACTCTTTGCCTTGTGACTGTTTCCAGGCTTTTA
GGCCTACCAAGCTTTTTTCTCTGGAGTGGATGTAGCACACATACACGGAC
ACATATAGATCGGTACATATGCATGTACACATATAGATAGGAACATATAC
ACACATAGATAGGTAATATACATGTACACACATAGATAGGCACATATACC
TGTACACTTATAGATAGGTACACATAATTCTATTTTCTGCGTAGCAGACG
GCAACACATAACCCAGTGTAACTCTTGACCCTCCCCGGTATGATGTTAGC
CCAGCCCTGCGATCTGGATATGAATGATGCCCCCCTATGCATCATTCTCT
TGTTGGTTCGACCCTTATTGTTCGGTTACCTTACTCGTCGGTTTTTAGAC
ATGTTTTTTTATTTGGTAAATAAATGCACCCCTTCCCTTATCCCGCTTTT
CATGTACCTTCCTTTTGTGCGCCCCTATTTGTCTCTCCCTCCTCCTCCTT
TATTGTCTATTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATCAAACCTCCCATCCCTCACCCT
TAGATAATTTTTCTATTATTAATAAAGTGAAATCTCTCTCAACTATAACA
TCATAAAGAATTAAAGGTGTTTTGATTGATGGGTTCCAGGTTTCCTATTT
TAAATGTCTCCTAGCCCCGGCCAGTTTGTTTTAATTTATTCAGAAGGAAT
GTATTTGTGATCATTCCAATTAATTTCTTGTCTGTTTTGTCTGGCATCTG
TGTGAAACTAGTTATAATATCTTTAAAGTTTGGCAAGCCGTACAGTAAAC
TGCCCAAGGTGGGATGGAAAAATTTCAGGGCCCAATTAACAAGCCAGCTT
GTTCCCAGCCTATCTACAGGAGATCATCTGTTGCCTCCAGTTGTCTCATA
ACCGTTAGGAACGTTTGATGAGTGACTCCAGGGGAGAAGGTAAAATGGAG
TGACTACGTCACTAAGCATGGGTTTATGGGTAAAGACGGAATATCTTTTG
AAAGAGGTATGCCTCTCTATTTTCCTTTCCCCCCTTTTTCATCTTTCCCT
TTTTTCTTTTGTATAGATCGGTTAACATAGTAATATTTAAAAAACCCTGC
CTTATTTATTACCCTTTCTTTCAAATGGAAAACGACATTTTCTCCCGCCT
ATTCCTTTCCTTCCCCACTTGCTTTTTTTTATTAATTTTGACATCCCGTA
TCACCCGCCCTCTCTTTAATAACCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_m05.g1 MSMg01no459_m05.g1 CHROMAT_FILE:
MSMg01no459_m05.g1 PHD_FILE: MSMg01no459_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:48 2005
         (404 letters)



>mm_chr13_114885015_114885818
          Length = 804

 Score =  766 bits (396), Expect = 0.0
 Identities = 402/404 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaaacctcccatccctcacccttagataatttttctattattaataaagtgaaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaaacctcccatccctcacccttagataatttttctattattaataaagtgaaatct 260

                                                                       
Query: 61  ctctcaactataacatcataaagaattaaaggtgttttgattgatgggttccaggtttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctcaactataacatcataaagaattaaaggtgttttgattgatgggttccaggtttcc 320

                                                                       
Query: 121 tattttaaatgtctcctagccccggccagtttgttttaatttattcagaaggaatgtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttaaatgtctcctagccccggccagtttgttttaatttattcagaaggaatgtatt 380

                                                                       
Query: 181 tgtgatcattccaattaatttcttgtctgttttgtctggcatctgtgtgaaactagttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgatcattccaattaatttcttgtctgttttgtctggcatctgtgtgaaactagttat 440

                                                                       
Query: 241 aatatctttaaagtttggcaagccgtacagtaaactgcccaaggtgggatggaaaaattt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatagctttaaagtttggcaagccgtacagtaaactgcccaaggtgggatggaaaaattt 500

                                                                       
Query: 301 cagggcccaattaacaagccagcttgttcccagcctatctacaggagatcatctgttgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagggcccaattaacaagccagcttgttcccagcctatctacaggagatcatctgttgcc 560

                                                       
Query: 361 tccagttgtctcataaccgttaggaacgtttgatgagtgactcc 404
           ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tccagttgtctcataactgttaggaacgtttgatgagtgactcc 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)