BAC Information

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BAC

Clone NameMSMg01-459N24
Chromosome13 (Build37)
Map Location 97,074,768 - 97,075,104
singlet/doubletsinglet
Overlap genenone
Upstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459N24.T7 (MSMg01no459_n24.b1)MSMg01-459N24.TJ (MSMg01no459_n24.g1)
ACCAG545364AG545365
length782780
length of high quality
(start - end)
386 (48 - 433)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no459_n24.b1 PHD_FILE: MSMg01no459_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:57 2005CHROMAT_FILE: MSMg01no459_n24.g1 PHD_FILE: MSMg01no459_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGAATTTCTTAGGCAAATGAATGGGACTAGAAAATATCATCC
TGAGTGAGGTAACCCAATCACAAAAGAACACATATGGTATGCACTCACTG
ATAAGTGGATATTAGCCTAGAAGTTCAGAATACCCAAGATATAATTCACA
GACCATATGAAGCTCAAGAAGAAGGAAGACCACAGTGTGGATCCTTTGAT
CCTTCTCAGAAGGGGAAACAAAATACCCATGGAAGGTGTTACAGAGACAA
ACTGTGGAGCAGAGACTGAAGGAATGACAATCCAGAGATCTCCACCTGTG
GACCCATCCCATAAACAACCACCAAACCCAGACACTATTGTGGATGCCAA
CAAGTGCTTTCTGACAGGAGCCTGATATAGCTGTCTCTTGAGAGGCTCTG
TCAGTGCCTGACTAATACTGAAGTGGATGCTCCCAGGCCTCCCTTAAATG
TAGACCAGGGCCCCCATGAAGGAGCTACATAAAGGACCCCCGTAGCTGAG
GGGGCTTTGTCCTCCCCCCGAGGGATCTACATATTGTAACCCTCCGTTTC
CTCCCTAACTTCCTCCGTATAATATCCCCACCCCAAAAAATCCCTCGGCT
TGTGATTTTCGGCCTTTACCCCCCTCTTTTTCTCCATCTTTCCCCCCCCT
TCACTTTTTTCCCACCTCCAGTTCTCCTCTCTTTCACATTTTTCTAATTC
CTCCCTTTCTTTTTCCCTTCTTTTTCCACTCT
CAATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTCAGCACGGGCATGACTTGATGCT
GTTGCATAATAGCTACTGTGTGCTGGAAACACCCAAAGGCTGTGAGTGAT
TAACTGGCAAGTGACTGCTGTCATTTGGTGGTAACTTTTCTTACTCAGCT
CAGGAGGTTGATGCTAATGGTTGTCGGGATGCTGGCCACATCTACCTGCC
TTCTCTGTGTGGTCCTCACACCAGTGTGGTTGGATGGGCAGTAGTGTCTT
CAAGTCTGATCTTGAAATCTAAAAGCTATGAAGAGTCAGAGGCCACTGGA
AAGCAGTGCATCTGTTGAGTAGAGATTTGGTAAAGGAAAGAGGAATCATA
AGAACGTTCATATGGCCATGTCTCCTGACAGAAGCCAGATATAGCTGTCT
CCTGAGAGGCTCTGCCACAGTCTGACTCATATCGATGCACATGCCTCGCC
CCCACCATTGGATCTATAATGGTGACCCCTTTGCCCCACCCACTCATATT
AACTGATTGAATCTAACCGTCTCCCTTTTTCCCTCCTATTAAAATCCCCC
ATTTTCTTCTACCACCTCTTTTTTCCTTAAACTTTTCCGTCCCCCTATCT
TTTCTCCCCTTTTTTTCCTTCTTGTTCTCTTGTGTCCCCCTCTTTCTTTC
TCTCACATCTATTATTCTTTTTCTTTCTCCCCCCCCTTCCTTTCCCTTTT
TTTTTCTTCCACCCTCTACCCCCCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_n24.g1 MSMg01no459_n24.g1 CHROMAT_FILE:
MSMg01no459_n24.g1 PHD_FILE: MSMg01no459_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:57 2005
         (338 letters)



>mm_chr13_97074568_97075304
          Length = 737

 Score =  630 bits (326), Expect = 0.0
 Identities = 335/338 (99%), Gaps = 1/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcagcacgggcatgacttgatgctgttgcataatagctactgtgtgctggaaacaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agtcagcacgggcatgacttgatgctgttgcataatagctactgtgtgctggaaacaccc 478

                                                                       
Query: 61  aaaggctgtgagtgattaactggcaagtgactgctgtcatttggtggtaacttttcttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaaggctgtgagtgattaactggcaagtgactgctgtcatttggtggtaacttttcttac 418

                                                                       
Query: 121 tcagctcaggaggttgatgctaatggttgtcgggatgctggccacatctacctgccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcagctcaggaggttgatgctaatggttgtcgggatgctggccacatctacctgccttct 358

                                                                       
Query: 181 ctgtgtggtcctcacaccagtgtggttggatgggcagtagtgtcttcaagtctgatcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctgtgtggtcctcacaccagtgtggttggatgggcagtagtgtcttcaagtctgatcttg 298

                                                                       
Query: 241 aaatctaaaagctatgaagagtcagaggccactggaaagcagtgcatctgttgagtagag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaatcaaaaagctatgaagagtcagaggccactggaaagcagtgcatctgttgagtagag 238

                                                 
Query: 301 atttggtaaaggaaagaggaatcataagaacgttcata 338
           |||||||||||||||||||||||| |||||| ||||||
Sbjct: 237 atttggtaaaggaaagaggaatca-aagaacattcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 737
Length adjustment: 9
Effective length of query: 329
Effective length of database: 728
Effective search space:   239512
Effective search space used:   239512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)