BAC Information

Click to search

BAC

Clone NameMSMg01-459O17
Chromosome13 (Build37)
Map Location 119,463,255 - 119,463,591
singlet/doubletsinglet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309
Downstream geneLOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459O17.T7 (MSMg01no459_o17.b1)MSMg01-459O17.TJ (MSMg01no459_o17.g1)
ACCAG545398AG545399
length788784
length of high quality
(start - end)
408 (43 - 450)337 (72 - 408)
definitionCHROMAT_FILE: MSMg01no459_o17.b1 PHD_FILE: MSMg01no459_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:01 2005CHROMAT_FILE: MSMg01no459_o17.g1 PHD_FILE: MSMg01no459_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGACAGAACACACTGATAAAACCAAAGGTGGGAAATCGATAAAGAAAA
TCAATAAAATCTCAAGATAGATCCATGAAAAGGTTAATGAAATTGATAAA
CCTGTAAACAGATGAGGATAAAAGAAAAAAATGTATTTTGTTGCCAACAG
ATGCTTTTAAAAATCATTAAAGATCCCATGGATATCATAAGAATAACAAA
TTAACATCAAGAAAATTCCTCACTCATAAATTTGATAATATATATGAAAT
TAGTTAGTCCTTTGAATGACATACATGACCCGTAAAATTTCATTTAAAAT
CAAATAGAACAATGTGCATTGACCTATATCTATTAAAGAAATGTAGTTGA
TAACTAATAACATTTCAAAACATAAAGTACAGGATAAGATTTGTTCAATG
ATCAAATCTGTCAAGCTTTTAATTATAAAGAATTATATGAGTCTATACTC
TCCCTTGGGAAGTTTCATAATTCATTTCTACAACATCATCCCTAATCACA
TAATATTACCAGGTAAGGAAATTAAAATCCTTAAAACTATTACTCCCCCT
GTTTCTCTAACATAGGGATAAAAACCCTATAATACTTCCAAATTGTGGCT
TATCATTGGGCAGGGAATCTTTTTTTTTTGGGCCAATTGGGGCCTCCCCC
CCCGTTTCTTTTCCACTTTTTTTATACTCCATCCTTTTTTTTTCCCCCCC
TGTTTCCCCCCCCCGCCTTTCTTTCTTTTTTCTCCTTA
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCTATTGTTTCAGTGGTCTAATAGATT
GAGAGACAAAGATGCCTCTTTAGAGTATCTTCATCTCTGTCAGAACTGTT
ACCTAGTGATGCATTGAAATGAACATCTTATTCTGCAATACAAGCATTAC
AGTGCATGCCAAGATTCTCAGCTTACAGATCCAATATAGAATCAAAATGA
TTGGAAGATGATAAAATCCAGATCTTTCATGATGTTTATTGCTGGACATA
AGAACAGAGTCTCAATGAGTGGAGCATCTCACAGAATTAGCCACACCATT
TAAATTGTTGTTATTGTTACCATCTTTGCTTTGCTGAGTAGATAATATTA
AAATTTGGTAGCTTCCAGCATATATAGCATATCTTACATTGCAGAATTGC
CCATGCGATCGTCCCTAATGATTTCCAGGGGTGTTTGACAGTTACTATAA
ACGACTACCAGGGCTGAGTTATGAAACCTTTCTTTCCAATAACTAAAACG
CCCTTTTCTTTAAAATAATATCCCTTTCCGGTAACAATGTCCCTCCCGGT
CCAACCATTCTCCCCCCCACTATTTTTCTTTTTCTTTTATAAATCCCATC
CCCTTCCTTCCTTCTTCCTCCTATCCTTTCTCCTCTTCTTGTTACCAACT
TCCATATTCTCTTCTCTATTCATTTCTCCCCTATTTTTTTTTTCTCTTCT
TTTCCNACTTCTCCCACCCTTCTCTTCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_o17.g1 MSMg01no459_o17.g1 CHROMAT_FILE:
MSMg01no459_o17.g1 PHD_FILE: MSMg01no459_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:01 2005
         (337 letters)



>mm_chr13_119463055_119463791
          Length = 737

 Score =  652 bits (337), Expect = 0.0
 Identities = 337/337 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctattgtttcagtggtctaatagattgagagacaaagatgcctctttagagtatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctattgtttcagtggtctaatagattgagagacaaagatgcctctttagagtatctt 260

                                                                       
Query: 61  catctctgtcagaactgttacctagtgatgcattgaaatgaacatcttattctgcaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctctgtcagaactgttacctagtgatgcattgaaatgaacatcttattctgcaatac 320

                                                                       
Query: 121 aagcattacagtgcatgccaagattctcagcttacagatccaatatagaatcaaaatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcattacagtgcatgccaagattctcagcttacagatccaatatagaatcaaaatgat 380

                                                                       
Query: 181 tggaagatgataaaatccagatctttcatgatgtttattgctggacataagaacagagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaagatgataaaatccagatctttcatgatgtttattgctggacataagaacagagtc 440

                                                                       
Query: 241 tcaatgagtggagcatctcacagaattagccacaccatttaaattgttgttattgttacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaatgagtggagcatctcacagaattagccacaccatttaaattgttgttattgttacc 500

                                                
Query: 301 atctttgctttgctgagtagataatattaaaatttgg 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctttgctttgctgagtagataatattaaaatttgg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)