BAC Information

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BAC

Clone NameMSMg01-460A10
Chromosome13 (Build37)
Map Location 112,344,239 - 112,356,153
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
Downstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460A10.T7 (MSMg01no460_a10.b1)MSMg01-460A10.TJ (MSMg01no460_a10.g1)
ACCAG545480AG545481
length708706
length of high quality
(start - end)		592 (43 - 634)496 (72 - 567)
definitionCHROMAT_FILE: MSMg01no460_a10.b1 PHD_FILE: MSMg01no460_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:09 2005CHROMAT_FILE: MSMg01no460_a10.g1 PHD_FILE: MSMg01no460_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,355,777 - 112,356,153)(112,344,239 - 112,344,734)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCATTATGAAGGCAGATGTTGTGAGGCCTGACTGTAAGTCAGCACTT
AATAGGCTGAGGCCAGAGGAGCAGCAGTGGGATTCTGACTCTGTGATACA
AAACCAAAACCAGACAACGGCAAGAAAGCCAGTAAAACTACTCTGCAAAA
TTCAGGCTCCATGCGAGGTGTGGTGGTGGCACACACCTTTTATCCCAGCA
CTTAGGAGGCAGAGGCAGGTAGATCTATCTCTAAGTCTGAGGCTAGCCTG
GTCTGTAGAGCTAGTTTCAGGACAGCCAGGGCTGTACAGAGAAACCCTGT
CTCAAAAAGCCACAAACAAGACAAAACCGAGCAACATCCAGGTGTGCTGA
GCTGGAACACAGTAAGTGTCTTAATTACTTTTCTATTGCTGTGGTAAGAC
ACCAAGGTCACTTATAGAGGAAAGTGTCTAGGGGGCTTACAGTTTCTGAT
TATAAGTCCATCACCATCATGACAGGGGACATGGTAGCCAGCAAACACGC
AGGCATCATGCTGGAGAAACAGCTGAGAGCTCACATCTGATCCACAAGCA
AGAGGCAGAGCTGTGGGTGGGTAATTAGGAATGGCGTGGGTTTTTGATAC
CTACAAATCCACCCCCAGTGACACACCTCCTCCAACAAGGCCACGCCTCT
TCCGAGGC

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGTGGAACTACAGTTCTAGACAGATGGGG
GCTGCCACGAGGCAGCTGGGAATCAAACCCAGGTCTCTGGAAGAGCAGTG
TGTGCTTTTAGCCACTGGAGCTTTCTCTCCACAGCTCCCTCTGGAGGGTT
CTACAGTAATGTAAACTAGGTCTGCCTTAAAGGAAGAACACGGTTCACTC
TGAGCCGAGTATGAGGGAGCATGGCCCAAACACATGGATTCCAGTTACCC
TTATTGGTGAGTGTCACTGGGAAGAGGCTACGTGATATACGACCAAGAAA
GCTGTAAATGTGTATATTTACCAGGTTACTCGGTGAGGGCGTCAGACAGA
TAGGCTATGCCTAGGTGAAGACATCATTTTCATGGACTTTATTGACTTTT
GAGGGTATTTTTTATTTTAAATTTTATGTATATGAGTGCTAGTCTGCATA
TATGTTTTATGGTCCCCAAGAAGGCCAGAAGAAGGTGTCAGATCCCTTGG
AAATGGAGATATGAGTGTTTGTGAGGTGACATATATATTCTGGTCACCAA
ACCTGGGTCCTTTGGTCTAACCACTGAACCATCTCCCAACCTCCACCCAT
CTAGAATTTTTTTTACCTTTAGGGGTGAAGACTTACGAATTGCTAAGCCC
TATGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_a10.b1 MSMg01no460_a10.b1 CHROMAT_FILE:
MSMg01no460_a10.b1 PHD_FILE: MSMg01no460_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:09 2005
         (592 letters)



>mm_chr13_112355774_112356765
          Length = 992

 Score =  675 bits (349), Expect = 0.0
 Identities = 370/377 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccattatgaaggcagatgttgtgaggcctgactgtaagtcagcacttaatagg 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaattctccaaaatgaaggcagatgttgtgaggcctgactgtaagtcagcacttaatagg 321

                                                                       
Query: 65  ctgaggccagaggagcagcagtgggattctgactctgtgatacaaaaccaaaaccagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgaggccagaggagcagcagtgggattctgactctgtgatacaaaaccaaaaccagaca 261

                                                                       
Query: 125 acggcaagaaagccagtaaaactactctgcaaaattcaggctccatgcgaggtgtggtgg 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acggcaagaaagccagtaaagctactctgcaaaattcaggctccatgcgaggtgtggtgg 201

                                                                       
Query: 185 tggcacacaccttttatcccagcacttaggaggcagaggcaggtagatctatctctaagt 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 200 tggcacacaccttttatcccagcacttaggaggcagaggcaggcagatctatctctaagt 141

                                                                       
Query: 245 ctgaggctagcctggtctgtagagctagtttcaggacagccagggctgtacagagaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ctgaggctagcctggtctgtagagctagtttcaggacagccagggctgtacagagaaacc 81

                                                                       
Query: 305 ctgtctcaaaaagccacaaacaagacaaaaccgagcaacatccaggtgtgctgagctgga 364
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 80  ctgtctcaaaaagccacaaacaagacaaaaccaaacaacatccaggtgtgctgagctgga 21

                            
Query: 365 acacagtaagtgtctta 381
            ||||||||||||||||
Sbjct: 20  gcacagtaagtgtctta 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no460_a10.g1 MSMg01no460_a10.g1 CHROMAT_FILE:
MSMg01no460_a10.g1 PHD_FILE: MSMg01no460_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:10 2005
         (496 letters)



>mm_chr13_112344039_112344934
          Length = 896

 Score =  874 bits (452), Expect = 0.0
 Identities = 485/496 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtggaactacagttctagacagatgggggctgccacgaggcagctgggaatcaaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtggaactacagttctagacagatgggggctgccacgaggcagctgggaatcaaaccca 260

                                                                       
Query: 61  ggtctctggaagagcagtgtgtgcttttagccactggagctttctctccacagctccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctctggaagagcagtgtgtgcttttagccactggagctttctctccacagctccctc 320

                                                                       
Query: 121 tggagggttctacagtaatgtaaactaggtctgccttaaaggaagaacacggttcactct 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaggggtctacagtaatgtaaactaggtctgccttaaaggaagaacacggttcactct 380

                                                                       
Query: 181 gagccgagtatgagggagcatggcccaaacacatggattccagttacccttattggtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagccgagtatgagggagcatggcccaaacacatggattccagttacccttattggtgag 440

                                                                       
Query: 241 tgtcactgggaagaggctacgtgatatacgaccaagaaagctgtaaatgtgtatatttac 300
           ||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgtcaccaggaagaggctacgtgatatacgaccaagaaagctgtaaatctgtatatttac 500

                                                                       
Query: 301 caggttactcggtgagggcgtcagacagataggctatgcctaggtgaagacatcattttc 360
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 501 caggttactcggtgagggcgtcagacaggtaggctatgcctaggtgaagacatcgttttc 560

                                                                       
Query: 361 atggactttattgacttttgagggtattttttattttaaattttatgtatatgagtgcta 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgggctttattgacttttgagggtattttttattttaaattttatgtatatgagtgcta 620

                                                                       
Query: 421 gtctgcatatatgttttatggtccccaagaaggccagaagaaggtgtcagatcccttgga 480
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 621 gtctgcatatatgttatatggtccccaaggaggccagaagaaggtgtcagatcccttggg 680

                           
Query: 481 aatggagatatgagtg 496
           | ||||||||||||||
Sbjct: 681 actggagatatgagtg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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