Query= MSMg01no460_a18.b1 MSMg01no460_a18.b1 CHROMAT_FILE:
MSMg01no460_a18.b1 PHD_FILE: MSMg01no460_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:11 2005
(371 letters)
>mm_chr13_16429953_16430732
Length = 780
Score = 629 bits (325), Expect = 0.0
Identities = 364/377 (96%), Gaps = 9/377 (2%)
Strand = Plus / Plus
Query: 4 ggaattctctttc-atgcatggctgccaagtagatgagcaaacccatgacagcagcagat 62
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 204 ggaattctctttcaatgcatggctgccaagtagatgagcaaccccatgacagcagcagat 263
Query: 63 aaagcatggtctctaagtatcgttagaggatactgagatgagcacagattgatgtgttgg 122
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagcatggtctctaagtatcattagaggatactgagatgagcacagattgatgtgttgg 323
Query: 123 aaggcacatgttgacaggacagatgactttaagccccttcccaaggccaaggagctgtcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggcacatgttgacaggacagatgactttaagccccttcccaaggccaaggagctgtcc 383
Query: 183 tttgtctgagggttatggtaacgagggaacttctgattagacaa-ctcatgtaattgctc 241
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 tttgtctgagggttatggtaacgagggaacttctgattagacaaactcatgtaattgctc 443
Query: 242 actggacctaagaaagatcaacatga-caggctccctgattctccagtgca-gttataga 299
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 444 actggacctaagaaagatcaacatgaacaggctccctgattctccagtgcaagttataga 503
Query: 300 -ttcggttttaagcattatttctgttg-cacacaa-tgtagttgcttgc-tccagagact 355
||| |||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||
Sbjct: 504 attcagttttaagcattatttctgttgtcacacaaatgtagctgcttgcatccagagact 563
Query: 356 agga-tgcatgtctcaa 371
|||| ||||||||||||
Sbjct: 564 aggaatgcatgtctcaa 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 780
Length adjustment: 9
Effective length of query: 362
Effective length of database: 771
Effective search space: 279102
Effective search space used: 279102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_a18.g1 MSMg01no460_a18.g1 CHROMAT_FILE:
MSMg01no460_a18.g1 PHD_FILE: MSMg01no460_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:11 2005
(509 letters)
>mm_chr13_16620315_16621223
Length = 909
Score = 646 bits (334), Expect = 0.0
Identities = 358/366 (97%), Gaps = 2/366 (0%)
Strand = Plus / Minus
Query: 1 tctgatttttccttatttcaataatgattgtgtatgtacaattttacaaagaaaatgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tctgatttttccttatttcaataatgattgtgtatgtacaattttacaaagaaaatgaac 417
Query: 61 ttggtttcacagttagaaaaagagagctcagttgtaagtgtgtgcagttttactaattaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 416 ttggtttcacagttagaaaaagagagctcagttgtaagtgtatgcagttttactaattaa 357
Query: 121 aaatgtagatacacactcttcaaagacaactaagaaagatgaattgatacatcggaatta 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 356 aaatgtagatacacactcttcaaagataactaagaaagatgaattgatacatcggaatta 297
Query: 181 aataactaactaaatatctaaccatgaagtaaataaaaccacacagaattttttttctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aataactaactaaatatctaaccatgaagtaaataaaaccacacagaattttttttctgt 237
Query: 241 atgaatgcaaaaatacatagctcatctcagtgctgttttctttctttctttctttctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgaatgcaaaaatacatagctcatctcagtgctgttttctttctttctttctttctttc 177
Query: 301 tttctttctttctttctttctttctttctttct-t-tctttctttctttctttctttctt 358
||||||||||||||||||||||||||||| ||| | ||||||| ||||||| |||||||
Sbjct: 176 tttctttctttctttctttctttctttctctctctctctttctctctttctctctttctc 117
Query: 359 tctttc 364
||||||
Sbjct: 116 tctttc 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
