Query= MSMg01no461_g20.b1 MSMg01no461_g20.b1 CHROMAT_FILE:
MSMg01no461_g20.b1 PHD_FILE: MSMg01no461_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:01 2005
(469 letters)
>mm_chr13_12122784_12123652
Length = 869
Score = 841 bits (435), Expect = 0.0
Identities = 459/467 (98%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 3 agcccacaagccccgataatggtttggaatgtccctaagagatagagcaagataaggtca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agcccacaagccccgataatggtttggaatgtccctaagagatagagcaagataaggtca 263
Query: 63 cccacactggaattcccataatgtgctgagagcctgagagctcactcgggtgtctctcta 122
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccacactggaattcccataa-gtgctgagagcctgagagctcactcgggtgtctctcta 322
Query: 123 tcttggtcatgagagaccccagcattctggacttctgcagaataaaacactctttgcatt 182
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcttggtcatgagagaccccggcattctggacttctgcagaataaaacactctttgcatt 382
Query: 183 tacatactgtttaagtccggggtatcattctttggcaaatcatggactcttacagtacat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tacatactgtttaagtccggggtatcattctttggcaaatcatggactcttacagtacat 442
Query: 243 ctgtaatccctttatttctacaacaaaactgagaggcagagacagaacaaacatgggcca 302
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgtaatcccagtacttctacaacaaaactgagaggcagagacagaacaaacatgggcca 502
Query: 303 agtagctggcttgaaaagagatgatcaccaagactctgccctaaactgagtagaactcaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtagctggcttgaaaagagatgatcaccaagactctgccctaaactgagtagaactcaa 562
Query: 363 gaactaacacccaaggttgtcttctgacctacatgcacacacatgacatatacatacacc 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 563 gaactaacacccaaggttgtcttctgacctacatgcacacacatgacatatacacacacc 622
Query: 423 atgacacgtgcgcacctccatacagagagagaggggtggggggattt 469
||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 623 atgacacgtgcacacctccatacagagagaaaggggtggggggattt 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no461_g20.g1 MSMg01no461_g20.g1 CHROMAT_FILE:
MSMg01no461_g20.g1 PHD_FILE: MSMg01no461_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:01 2005
(477 letters)
>mm_chr13_12281299_12282175
Length = 877
Score = 891 bits (461), Expect = 0.0
Identities = 473/477 (99%)
Strand = Plus / Minus
Query: 1 tcagatccctaaatacaatggcttagcactcagagtgagcccctaatgaaagtgcagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcagatccctaaatacaatggcttagcactcagagtgagcccctaatgaaagtgcagttt 618
Query: 61 ttcctgaccatggccaggggtggaaagcagttcggtgccactgtgacgcaaggatagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcctgaccatggccaggggtggaaagcagttcggtgccactgtgacgcaaggatagagg 558
Query: 121 ccacaggctgcttctgactggttgtaccccctctcttctgtgttcacaggcctttgcaga 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccacaggctgcttctgcctggttgtaccccctctcttctgtgttcacaggcctttgcaga 498
Query: 181 ggagctccatgagagagttcgccgagaactgtgggcctactctgggagtgagcagttggg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 ggagctccatgagagagttcgccgagaactgtgggcctactctaggagtgagcagttggg 438
Query: 241 cgtcccatacttgcgcagactccggtatgagggcatccggccagctcctggttaccccag 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cgtcccagacttgcgcagactccggtatgagggcatccggccagctcctggttaccccag 378
Query: 301 ccagcctgaccatactgagaagcttaccatgtggagactggccagcatcgagcaggccac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcctgaccatactgagaagcttaccatgtggagactggccagcatcgagcaggccac 318
Query: 361 aggtatgtggggaccgctcactgagcgcatgcactcaccaaagtcatatgcagctaaagt 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 317 aggtatgtggggaccgctcactgagcgcatgcactcaccaaagacatatgcagctaaagt 258
Query: 421 ccttataaagtgggagaacttaggatgaagtcatctctcatccccttctttctcagg 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccttataaagtgggagaacttaggatgaagtcatctctcatccccttctttctcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
