BAC Information

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BAC

Clone NameMSMg01-461J10
Chromosome13 (Build37)
Map Location 73,730,738 - 73,731,116
singlet/doubletsinglet
Overlap genenone
Upstream geneIrx2, LOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3
Downstream geneClptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461J10.T7 (MSMg01no461_j10.b1)MSMg01-461J10.TJ (MSMg01no461_j10.g1)
ACCAG546676AG546677
length782752
length of high quality
(start - end)
377 (76 - 452)232 (84 - 315)
definitionCHROMAT_FILE: MSMg01no461_j10.b1 PHD_FILE: MSMg01no461_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:14 2005CHROMAT_FILE: MSMg01no461_j10.g1 PHD_FILE: MSMg01no461_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTCTATATTTGCGGGCGCTAATAGAATCACTATATTCAGAGAATGCG
CGGAATTCACCTTTTTCCTAATTCCCACAAATTATGTCACTTGCTCTGAT
TACCCATAATATGTTTGTTTGCTTCCCAGTTCTGGAACACACACAGTGAT
TTCAGAATTGCTATGTCTCATCTCTGTGTCGACCAGCTTCACAAATGAGG
GCAGTGCACAGCTTCTTTTGCCTTTCATCTGCTAAAACTCTACTTCCACA
AGTGCACTCAGAGAAGTTCACTGACTTCTCAGAGCCACCTTGGGGCTGGA
TAATATAAACCATGCTTCTTATTAGGGTCTGGTGTATTTCTGTGCCCCCC
ACCCCAGACAGAATACCAAGTCCTTTGCAGCAACTAGCATCTAGTCCTTT
AGGTAAAGGATCTGTTTGTTCTCTCCCCTAATCCTCTCACCTTTGCAAGG
AGTGGAGATTGATCTTGGAAGAAGGACAAAGATAGCAGGTTTGTCTAGAA
GTACCGTTACCTATAGTTTCTGCCTGGCCTGTTGCATGGTACCCAATGAG
TGCGCATATTTTGAAATTCCCTGTGCATCTTAAGTGTGTGGATTAACTCC
TCTTGGGTTTTCTCACTTTCTTTTACTAAATGGTTTCCGCTTATATTATA
TTTTCTTCTTTATCTTTATTGTTCACTTACACTCTTCTCTTTATTTTTTA
TAATACCATATTTTCCCTCTCTATTTTATAACCTATCTTCTCCCTACCTT
ACCTATCTAATCTTCACCTCTTTTAATATATA
TCCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGGGACACACCTTT
AATCTGGGCCACACCTTCTGCCAAAGACCTACATAGGCCATTGGAAGAAG
GAAGATTTGCTCTTCTTCGCCTCCTTGCATTTACTTGCCAGCACATCTGT
TGGAACCTACTTCTACAGAAGACCAGCTGAAACAACTAGCCTCCTGGGAC
TGAGCAACAACTAAATTCTTGGAGTTTTCATTCACAGCTGACCATTGTTG
GGTTAGTTGGACTACATATCTGTAAGTCGTTACAATAAATTCCCCCAATA
TAGAGAGAGATTCCATAAGTTCTGTAACTCTAGAAAACCCTGACTAATAC
ACTATGCTTAAGTTTTATAAAATAGATATCAAACCAAACAATTTAGAAGA
GATAAAGGAAGACACTATAATTAACAAAGAGAGCAACCAACCCAGAAGAT
ATGGTGATTGTAAAACACTGGGATACGTAATTTCTTGACATTAACACTGT
TGGACATAATAGCCCAGGGAGTCCCCGGGCCTATAATAGTGGAAGGGCTC
AATACTCCACTCCAATTTGATTAATAATGTCCTTTACTACCCCATCCTAT
CCTATTGTTGAAAAAGTCCCCAATATCTCTTATTTGTACCCTTGTTCCCT
CTTATACTTTAACTGACTTCTTTCTACTCTCCTCTCCCTACATTTTTTCT
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_j10.b1 MSMg01no461_j10.b1 CHROMAT_FILE:
MSMg01no461_j10.b1 PHD_FILE: MSMg01no461_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:14 2005
         (377 letters)



>mm_chr13_73730352_73731130
          Length = 779

 Score =  675 bits (349), Expect = 0.0
 Identities = 371/379 (97%), Gaps = 2/379 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacaaattatgtcacttgctctgattacccataatatgtttgtttgcttcccagttctgg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 cacaaattatgtcacttgttctgattacccataatatgtttgtttgcttcccagttctgg 706

                                                                       
Query: 61  aacacacacagtgatttcagaattgctatgtctcatctctgtgtcgaccagcttcacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aacacacacagtgatttcagaattgctatgtctcatctctgtgtcgaccagcttcacaaa 646

                                                                       
Query: 121 tgagggcagtgcacagcttcttttgcctttcatctgctaaaactctacttccacaagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tgagggcagtgcacagcttcttttgcctttcatctgctaaaactctacttccacaagtgc 586

                                                                       
Query: 181 actcagagaagttcactgacttctcagagccaccttggggctggataatataaaccatgc 240
           |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| 
Sbjct: 585 actcagagaagttcactgacttctcagagccacctttggactggataatataaaccatgt 526

                                                                       
Query: 241 ttcttattagggtctggtgtatttctgtgccccccaccccagacagaataccaagtcctt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttcttatgagggtctggtgtatttctgtgccccccaccccagacagaataccaagtcctt 466

                                                                       
Query: 301 tgcagcaactagcatctagtcctttaggtaaaggatct--gtttgttctctcccctaatc 358
           |||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||
Sbjct: 465 tgcagcaactagcatctattcctttaggtaaaggatctctgtttgttctctcccctaatc 406

                              
Query: 359 ctctcacctttgcaaggag 377
           |||||||||||||||||||
Sbjct: 405 ctctcacctttgcaaggag 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 779
Length adjustment: 9
Effective length of query: 368
Effective length of database: 770
Effective search space:   283360
Effective search space used:   283360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)