Query= MSMg01no462_h08.b1 MSMg01no462_h08.b1 CHROMAT_FILE:
MSMg01no462_h08.b1 PHD_FILE: MSMg01no462_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:29 2005
(463 letters)
>mm_chr13_110584196_110585058
Length = 863
Score = 710 bits (367), Expect = 0.0
Identities = 397/411 (96%), Gaps = 8/411 (1%)
Strand = Plus / Minus
Query: 1 ctcacggtccagggttcggtgttgactactgaggcggctctcggtccaagaccatgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctcacggtccagggttcggtgttgactactgaggcggctctcggtccaagaccatgaaac 548
Query: 61 gacgcaacagaaccgacccaccacataaaagggaggcatgactggggccagcttctggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gacgcaacagaaccgacccaccacataaaagggaggcatgactggggccagcttctggtc 488
Query: 121 tatgagaagaggaggaagaagagtggagggagggaagcgagggaggaaagtgtgagagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tatgagaagaggaggaagaagagtggagggagggaagcgagggaggaaagtgtgagagag 428
Query: 181 ccattggggatctattccttcatgggaaagaggatggaaaaatacagccacagaaccgga 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccattggagatctattccttcatgggaaagaggatggaaaaatacagccacagaaccgga 368
Query: 241 aaatggat----attttaaaaaatccacttccctatcaaagcagccctctgggtacccgg 296
|||||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 367 aaatggatagaaa----aaaaaatccacttccctatcaaagcagccctctgggtacctgg 312
Query: 297 cacagggctacacactcaccctacacctgtcacatcccagacatgcttccccggtgtttc 356
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 311 cacagggctacacactcaccccacacctgtcacatcccagacatgcttccccagtgtttc 252
Query: 357 cataaagctaaataaataacgtgctcatccaccgggcaggagtggctgggg 407
|||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 251 cataaagctaaataaataacgtgctcatcctcccggcaggagtggctgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_h08.g1 MSMg01no462_h08.g1 CHROMAT_FILE:
MSMg01no462_h08.g1 PHD_FILE: MSMg01no462_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:29 2005
(443 letters)
>mm_chr13_110389630_110390472
Length = 843
Score = 826 bits (427), Expect = 0.0
Identities = 439/443 (99%)
Strand = Plus / Plus
Query: 1 ttgagtttagaaaatgggctgtcacattttccgaaggaatgtggtaatttaatctttgaa 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagtttagaatatgggctgtcacattttccgaaggaatgtggtaatttaatctttgaa 260
Query: 61 gaaaatgagctcgtacttttccctctatcctcagttggcatgtgattcctgtcgtcattc 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gaaaatgagctcgtacttttccctctatcctcagttggcatgtgattcttgtcgtcattc 320
Query: 121 aagccaaaatttgttattataaagtaacaaactcattgtattgcccaagttcaggttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccaaaatttgttattataaagtaacaaactcattgtattgcccaagttcaggttaaa 380
Query: 181 cattaacctttctccatggatcaattcctgacaggaactggggaagaggcagagctcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaacctttctccatggatcaattcctgacaggaactggggaagaggcagagctcttc 440
Query: 241 aatgtcttgtgcttgccaagtgagaaaccctgaggcagctcagctagggttccatcatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtcttgtgcttgccaagtgagaaaccctgaggcagctcagctagggttccatcatgt 500
Query: 301 gctctgtgggagccttgtgagaagccttggttcagctctgagaacagctctgtcccagcc 360
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gctctgtgtgagccttgtgagaagccttggttcagctctgcgaacagctctgtcccagcc 560
Query: 361 cagtgtgcccaccttgccctaaggcaatccttcccatgacctttcagtctccaccctctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtgtgcccaccttgccctaaggcaatccttcccatgacctttcagtctccaccctctg 620
Query: 421 ttctgaatttgaaaggcgggctc 443
|||||||||||||||||||||||
Sbjct: 621 ttctgaatttgaaaggcgggctc 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
