BAC Information

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BAC

Clone NameMSMg01-462N15
Chromosome13 (Build37)
Map Location 12,607,144 - 12,607,592
singlet/doubletsinglet
Overlap geneEdaradd
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900
Downstream geneEro1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462N15.T7 (MSMg01no462_n15.b1)MSMg01-462N15.TJ (MSMg01no462_n15.g1)
ACCAG547641AG547642
length767771
length of high quality
(start - end)		452 (66 - 517)457 (75 - 531)
definitionCHROMAT_FILE: MSMg01no462_n15.b1 PHD_FILE: MSMg01no462_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:00 2005CHROMAT_FILE: MSMg01no462_n15.g1 PHD_FILE: MSMg01no462_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACAATCCG
CGGAATTCAGAATGTTTTCCCCGCACTCCTAGGCCTGCTTCTTTTATTTA
CAACGCTTCCTAACTTTTCATAACTCTCCCACTTCTGAATTTCCCTGCCA
CAGCCTTTCATCTCTTCCCTGATTGGTTGGATTCTTGTCACTGGGTCAGT
AGGGAAGGCCACTCTCCAAGGACCCCCTAGGAACACACTGGCTTGACACA
GGCCCCTTCCCTAGCTGGTTCAGTCAGACAGAAGAGAAGGGAACCGTCAG
CATCTTCCGCGGCTTTGAGCTTTTTGTGTCTGTGATCCGGAATCTTTACA
AGCAGGGATGACAACAGCTGTGGGTGAGCAAAAGCTTAGGGGGAAATAAA
AAGAAAGACAGAAAAGAAGAAAAAAAATAAACTTGCTCTTAAAATCCCAA
GTTCAAAGAGTTGCCCTCAGTTCGGCACTAGATTGTACAAAGGGCCCCAC
TCTTGCCTGGGGAACTGGGAACTGAACATGATTCCTGCTTATTTTCTCCA
AACAGACATCTTTGGGGGATATTTAAAGTTCCTGAGACCAGAATGTGGTA
GGTAAAGGGAGATGCCCCTTTGTTCTTGTTTTGGACACCGCAGCTGGTTT
CTCTATTTATAGGCTTTGGGGGTGGCTAATAACCCTCCCCCTTTCTTCAG
AAGAACTTCCGGAGTGTGAGTCCCCAACCCCCAACTTCTTACCACTTACC
ATAATAAACACATCCCT

NCCGATGATATTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGTTCGAGGCCAGCCTGGTCTACA
AAGTGAGTTCCAGGACAGCCAGGGCTACACCGAGAAACCCTGTCTCANAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGAAAAATACCTTTAATTGCT
TTTGTTTAAAGTTATCAAACTACAGTTTTTGAAACACACACACACATGGT
ATGGTGGTACATACCATTAATCTCAGCACTTGGGGAAGCAGAGGCTGGTG
GTTCTCTGTGAGTTCAAGGCCAGCCTTGCCTACATAGTGAGTTCTAGAAC
AGTCAGGGCTACATAGTAAAGCTTTGCCCCCATCCAAAAAAAGAAAAGAA
ATATGTATTTCTATTACCTATATTTATACTTAACAATATATAACTGTAGG
TTTTTATTTTATGTGTATGAGCATTTTGTCTTTGTGGTGTGTGCATGTGT
GTGTGTGTGTGTACCACTTGTATGCCGGGAGCCTACAAAGGCCATAAAAT
CCCCTGTGTTGGATTCCCCTGGAACTAGAGATACAGAAGGTTGTGAGCTG
CTAAGTGGCTTCTGGGAAAAAACCCAGACTCTGTGAAAAAAAAACTAGTG
CTCTTAACCACTGAAACCTCCCCTTCAACCCCTAAAATTAAAAAAAAAAA
AAAAAGACGGCCACCCCACCACAAATAAATAAAAATGGGCTTTTCCCCGG
CCTCTGAAAAAATAAACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_n15.b1 MSMg01no462_n15.b1 CHROMAT_FILE:
MSMg01no462_n15.b1 PHD_FILE: MSMg01no462_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:00 2005
         (452 letters)



>mm_chr13_12606940_12607792
          Length = 853

 Score =  791 bits (409), Expect = 0.0
 Identities = 439/453 (96%), Gaps = 9/453 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   cccgcactcctaggcctgcttcttttatttacaacgcttcctaacttttcataactctcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cccgcactcctaggcctgcttcttttatttacaacgcttcctaacttttcataactctcc 594

                                                                       
Query: 65  cacttctgaatttccctgccacagcctttcatctcttccctgattggttggattcttgtc 124
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 593 cacttctgaatttccctgctacagcctttcatctcttccctgattggtcggattcttgtc 534

                                                                       
Query: 125 actgggtcagtagggaaggccactctccaaggaccccctaggaacacactggcttgacac 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 533 actgggtcagtagggaaggccactctccaaggatcccctaggaacacactggcttgacac 474

                                                                       
Query: 185 aggccccttccctagctggttcagtcagacagaagagaagggaaccgtcagcatcttccg 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 473 aggccccttccctagctggttcagacagacagaagagaagggaaccgtcagcatcttccg 414

                                                                       
Query: 245 cggctttgagcttttt----gtgtctgtgatccggaatctttacaagcagggatgacaac 300
           |||||||||||    |    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cggctttgagc----tgagcgtgtctgtgatccggaatctttacaagcagggatgacaac 358

                                                                       
Query: 301 agctgtgggtgagcaaaagcttagggggaaataaaaagaaagacagaaaagaag-aaaaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 357 agctgtgggtgagcaaaagcttagggggaaataaaaagaaagacagaaaagaagaaaaaa 298

                                                                       
Query: 360 aaataaacttgctcttaaaatcccaagttcaaagagttgccctcagttcggcactagatt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 297 aaataaacttgctcttaaaatcccaagttcaaagagttgccctcagttcggcactagatc 238

                                            
Query: 420 gtacaaagggccccactcttgcctggggaactg 452
           |||||||||||||||||||||||||||||||||
Sbjct: 237 gtacaaagggccccactcttgcctggggaactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 853
Length adjustment: 10
Effective length of query: 442
Effective length of database: 843
Effective search space:   372606
Effective search space used:   372606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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