NTTGTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGTCCTGTCTCACCTTCATAATAGACTGTAAGATAACAT
AAACCCTTTCTTTCCCAAGTTGCTTTTGGTCACAGTGTTTACCCTAGCAA
TGAAAACCTAACTAAGACAGCACACTTGCCTATAACATAATGATGACTCT
AGAGATGTTGCTGGTTTATTCTGTTCCATCTAAATAATGGAGTTAGCCAG
TGTCCCAGATCAAGAGGCAATGATTCCCCACAACACGTACAGAGGGATGT
TCAGAGTCTTTAGGAAATCTATCCATCTCATTTGGAGGGGATACCAGACT
TAACTATTTGGTGTAAATTATCTGTTCTTATTAGCTTATGCTCCCCTCTG
TCTCAGTTATGACTCCAGAATTTGTAACAAACTCTATGTTTCACCTAAAC
CTTTTTTTAAATTTAAGCACTTATATTCTGATCTGAAACTCCTCAGTACA
TGATAATCATAGGTAAATGGACAGAACGGTCACTGTAAGATTAAAAACTC
TACTAGGACACACCAAACTGGGAAAACTTTAGCTTCGACTCTGAANAATG
TTTGAAATCTGACTAGCATGAAACAACTATGCTTCTTGGAGTCATGTCCT
TCTTCCTCATTTTTACAAACTATCACATAGTCTGACAAAATATAAAAGAC
TTTGGTTTATATTGGAAATGGTGGGGGATTATTTGAGCAAGAATGTAAGG
TCCAGAAAAAAAAT

NTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACAGCTGATAAACAACT
TCAGAAAAGTGGCTGGATATAAAATTAACTGAAACAAATCAGTAGCCTTT
TTATACTCAAAGGATAAAAGGGCTGAGAAAGAAATTAGGGAAATGACAGC
CTTCACATAGTCACAAACAATATCAAATATCTTAGTATGACTCTAACCAA
ACAAGTGAAAGATTTGTATGGCAAGAACTTCAATTCTCTGAAGAAATTAG
AAAAGACTTTAGAAGATGGAATGACCTCCCATGCCCATGAATTGGTAGAA
TTAATATAGTAAAAATGGCTACCTTTCCAAAAGCAATCTACTGATTCAAT
GCAATTTCTATCAAAATTCCAAATCAATTCTTCATAGAGTTAGAAAGAGC
AATTTGCAAATTCATTTGGATTAACAAAAACCCAGGATAATGAAAGCTAT
TCTCAACAATTAAAGGACTTCTGGGGAAATCACCATCCCTGACCTCAAGC
TGTACTACAATAGTGATAAAAGCTGTATGGTATTGGTACAGTGACAGGCA
GGTACATCAGTGGGATAGATTTTGAGGCCCAGAAATGAACCCCCCCACCT
TTGGTCACTTGATCTTTGACAAAAAAGCTAAACCACCCCGAAAAAAAAGA
TGGGTTTTTTACAAACTGGGGGGCTCCATGGAAAAAAAGGGAATTGGTCC
CTTTTTAACTCCCCGGGAAAAG

Query= MSMg01no463_b23.b1 MSMg01no463_b23.b1 CHROMAT_FILE:
MSMg01no463_b23.b1 PHD_FILE: MSMg01no463_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:23 2005
         (535 letters)



>mm_chr13_16145613_16146545
          Length = 933

 Score =  920 bits (476), Expect = 0.0
 Identities = 516/532 (96%), Gaps = 9/532 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtcctgtctcaccttcataatagactgtaagataacataaaccctttctttc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 gaattcctgtcctgactaaccttcataatagactgtaagataacataaaccctttctttc 784

                                                                       
Query: 65  ccaagttgcttttggtcacagtgtttaccctagcaatgaaaacctaactaagacagcaca 124
           ||||||||||||| |||||||||||||||||||||||||||||    |||||||||||||
Sbjct: 783 ccaagttgctttt-gtcacagtgtttaccctagcaatgaaaac----ctaagacagcaca 729

                                                                       
Query: 125 cttgcctataacataatgatgactctagagatgttgctggtttattctgttccatctaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 cttgcctataacataatgatgactctagagatgttgctggtttattctgttccatctaaa 669

                                                                       
Query: 185 taatggagttagccagtgtcccagatcaagaggcaatgattccccacaacacgtacagag 244
           ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 668 taatctagttagccagtgtcccagatcaagaggcaatgattccccataacacgtacagag 609

                                                                       
Query: 245 ggatgttcagagtctttaggaaatctatccatctcatttggaggggataccagacttaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggatgttcagagtctttaggaaatctatccatctcatttggaggggataccagacttaac 549

                                                                       
Query: 305 tatttggtgtaaattatctgttcttattagcttatgctcccctctgtctcagttatgact 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 548 tatttggtgtaaattatctgttctcattagcttatgctcccctctgtctcagttatgact 489

                                                                       
Query: 365 ccagaatttgtaacaaactctatgtttcacctaaacctttttttaaatttaagca-ctta 423
           |||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||
Sbjct: 488 ccagaatttgtaacaaa--ctatgtttcacctaaacctttttttaaatttaag-agctta 432

                                                                       
Query: 424 tattctgatctgaaactcctcagtacatgataatcataggtaaatggacagaacggtcac 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 431 tattctgatctgaaactcctcagtacatgatattcataggtaaatggacagaacggtcac 372

                                                               
Query: 484 tgtaagattaaaaactctactaggacacaccaaactgggaaaactttagctt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtaagattaaaaactctactaggacacaccaaactgggaaaactttagctt 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 933
Length adjustment: 10
Effective length of query: 525
Effective length of database: 923
Effective search space:   484575
Effective search space used:   484575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)