BAC Information

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BAC

Clone NameMSMg01-463D06
Chromosome13 (Build37)
Map Location 27,118,438 - 27,215,208
singlet/doubletdoublet
Overlap genePrl, Prl3d1, Prl3d2
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463D06.T7 (MSMg01no463_d06.b1)MSMg01-463D06.TJ (MSMg01no463_d06.g1)
ACCAG547910AG547911
length742731
length of high quality
(start - end)		570 (80 - 649)252 (83 - 334)
definitionCHROMAT_FILE: MSMg01no463_d06.b1 PHD_FILE: MSMg01no463_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:30 2005CHROMAT_FILE: MSMg01no463_d06.g1 PHD_FILE: MSMg01no463_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:31 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(27,214,639 - 27,215,208)(27,118,438 - 27,118,689)
sequence
NNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGA
ATCCGCGGAATTCACAAAAATGCTTACTATTTCTATATTAATTATATAAA
GAATATACTTGCATAAGGTATTTACTAGGAAAATACAAAATTAATTAAGA
AATAAAGGATTTTTTAAAATATACTGCTTAAAGATTAGGAGAAAGGAATA
AAGGGTATAATAAAACAAATGAGGGAAACTAACAATGAAAATGTATATTC
TCTATAAATATAGGGGTATATAATCCATATACTCAATTTTCAATGGAAAT
TTTCTCTATTGTTTCCTAACTGTCAGACCCTGAACCTATGAGTTATATCC
CTGAAGAAAAGGTAATGTATTTTGTTTGTAAATCATCTCTTCAATTGCAC
TAAGACACTTTCCTGAAAATCATAAACCATAATTCTTAGCCTTTGTGAAC
TTAAAAAGAGCTATTGTGTATTGTTTTTGCTTTTCACTTTTTGTCATGCT
TTCAATTTTATTTAGTATTATACCTTTCATATAAGTACCTTATAGTTTTG
AGTTTTTCTAAATTTATTCTTTCCATATACCTAACTTAAATGCAATTATC
CTGTAATATGTATCTTCAGATCAGTAAGTATACAATGGTCATGAAGACAG
AACCCATGGGAAAATTACCAGGAAATCAATGTTCCTATGACAAAGTTCAA
ACCAAGGTATTATTTTTAAAGTTATTAGAAAAAATAAAATGG

NNTTTCCTCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTTGCTGGCAAAGCA
AAGCCTTCTGGTATTAAGTAAACGGATGAGACGATGAAGATATTAGTTGC
AGATCTTCAAGGAAACCTTTGAGATGTTCATGGGAGTCAACTTTGAACTT
TTGTAGGTACAGGAGCTCAATATTTGTGATCAGAAATATATCTTCTGTCC
ATGTTGACTTTCTTTTCAGTCATGCTGTACACACATGGCTGANAATGTAA
CCACTAGAAGCTTAGAGTTCCCTCCTCCTAGTAACTATATTCAAAATGCC
ATAGGGTTTTACAGGAATTAAGTCCTGTACCCAGTCTGTTGAACCAGCTA
ACGGCAAGGTCCCACCCTTTGAACCTTTTCCCCAGGGGAGCTTCCAGGAA
AGGGCCCCNNGGGGAATTCCCCTTTGTGTTTTGGGAAAAGGGGGGGGGGG
GATTTTCGGGGTTTTCCCAAAAAGACAAAAAAAACCTTTTGTGGAAACAA
TATATGGGCCCGCGTTAAAAATATTTGGGGGCCCCCCCTCTAGGGGGAAA
ATTAATGGGGCCTCTTTTTTCCTCCCCCATTAATTATTTTTTTTTTTGTT
GGGAGAAAATAAAAAAATTTTTTCTCTTTTCCGGCTTGTGACTCGAACCC
CACATAGATGTTCTTCCCCCCCCCCATCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_d06.b1 MSMg01no463_d06.b1 CHROMAT_FILE:
MSMg01no463_d06.b1 PHD_FILE: MSMg01no463_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:30 2005
         (570 letters)



>mm_chr13_27214439_27215408
          Length = 970

 Score = 1025 bits (530), Expect = 0.0
 Identities = 560/570 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctatattaattatataaagaatatacttgcataaggtatttactaggaaaatacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 770 tttctatattaattatataaagaatatacttgcataaggtatttattaggaaaatacaaa 711

                                                                       
Query: 61  attaattaagaaataaaggattttttaaaatatactgcttaaagattaggagaaaggaat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 710 attaattaagaaataaaggatttttaaaaatatactgcttaaagattaggagaaaggaat 651

                                                                       
Query: 121 aaagggtataataaaacaaatgagggaaactaacaatgaaaatgtatattctctataaat 180
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaaggatataataaaacatatgagggaaactaacaatgaaaatgtatattctctataaat 591

                                                                       
Query: 181 ataggggtatataatccatatactcaattttcaatggaaattttctctattgtttcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ataggggtatataatccatatactcaattttcaatggaaattttctctattgtttcctaa 531

                                                                       
Query: 241 ctgtcagaccctgaacctatgagttatatccctgaagaaaaggtaatgtattttgtttgt 300
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 530 ctggcagaccctgaacctatgagttatatccctgaagaaaaggtaatgtattttgtttct 471

                                                                       
Query: 301 aaatcatctcttcaattgcactaagacactttcctgaaaatcataaaccataattcttag 360
           ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||
Sbjct: 470 aaatcatctcttcaattgcactaagacacttttttgaaaatcataatccataattcttag 411

                                                                       
Query: 361 cctttgtgaacttaaaaagagctattgtgtattgtttttgcttttcactttttgtcatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cctttgtgaacttaaaaagagctattgtgtattgtttttgcttttcactttttgtcatgc 351

                                                                       
Query: 421 tttcaattttatttagtattatacctttcatataagtaccttatagttttgagtttttct 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 350 tttcaattttatttagtattatacctttcatataagtacctcatagttttgagtttttct 291

                                                                       
Query: 481 aaatttattctttccatatacctaacttaaatgcaattatcctgtaatatgtatcttcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaatttattctttccatatacctaacttaaatgcaattatcctgtaatatgtatcttcag 231

                                         
Query: 541 atcagtaagtatacaatggtcatgaagaca 570
           ||||||||||||||||||||||||||||||
Sbjct: 230 atcagtaagtatacaatggtcatgaagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no463_d06.g1 MSMg01no463_d06.g1 CHROMAT_FILE:
MSMg01no463_d06.g1 PHD_FILE: MSMg01no463_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:31 2005
         (252 letters)



>mm_chr13_27118238_27118889
          Length = 652

 Score =  451 bits (233), Expect = e-131
 Identities = 247/252 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagttgctggcaaagcaaagccttctggtattaagtaaacggatgagacgatgaagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctagttgctggcaaagcaaagccttctggtattaagtaaacggatgagatgatgaagata 260

                                                                       
Query: 61  ttagttgcagatcttcaaggaaacctttgagatgttcatgggagtcaactttgaactttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagttgcagatcttcaaggaaacctttgagatgttcatgggagtcaactttgaactttt 320

                                                                       
Query: 121 gtaggtacaggagctcaatatttgtgatcagaaatatatcttctgtccatgttgactttc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggtacaggagctcaatatttgtaatcagaaatatatcttctgtccatgttgactttc 380

                                                                       
Query: 181 ttttcagtcatgctgtacacacatggctganaatgtaaccactagaagcttagagttccc 240
           |||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct: 381 ttttcagtcatgctgtacacacgtggctgaaaatgtaaccactagaagcttggagttccc 440

                       
Query: 241 tcctcctagtaa 252
           ||||||||||||
Sbjct: 441 tcctcctagtaa 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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