Query= MSMg01no463_k24.b1 MSMg01no463_k24.b1 CHROMAT_FILE:
MSMg01no463_k24.b1 PHD_FILE: MSMg01no463_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:12 2005
(575 letters)
>mm_chr13_8279603_8280577
Length = 975
Score = 1027 bits (531), Expect = 0.0
Identities = 564/575 (98%)
Strand = Plus / Minus
Query: 1 aacttctgaccattctgcctctacctcctgagtgctagtttatagctatgcatcactatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 aacttctgaccattctgcctctacctcctgagtgctagtttatagctatgcatcactatg 848
Query: 61 cttagtatatgaggtgatagagattgagtccaaggcctcctataagctaagaaagctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cttagtatatgaggtgatagagattgagtccaaggcctcctataagctaagaaagctctc 788
Query: 121 tttcagctaagacaatgctttgtaccaaaagtatctctctataaacactatttgataatt 180
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 787 tttcagctaagtcaatgctttgtaccaaaagcatctctctataaacactatttgataatt 728
Query: 181 atagtcacataacacatgcatgattatgctacgtttcaatgaaagccttctgaactagac 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atagtcacataacacatgcgtgattatgctacgtttcaatgaaagccttctgaactagac 668
Query: 241 cagtccacatgtgtcttcctaggagtagagggtgctccttcttcaggggtgcctgacacc 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 667 cagtccacatgtgtcttcctaggagtagagggtgctccatcttcaggggtgcctgacacc 608
Query: 301 atattttctgcttttgttcttacctccaatctagtctctgattacactggtctagtttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atattttctgcttttgttcttacctccaatctagtctctgattacactggtctagtttaa 548
Query: 361 gtatccacagtgaaacatcaaagttgtgttgaacagtcaataaaaccgtggtagctaaaa 420
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 547 gcatccacagtgaaacatcaaagttgtgtttaacagtcaataaaaccgtggtagctaaaa 488
Query: 421 tggcagcatttctgtcttcttgattctttatttatgccattctgttcagtacaaatataa 480
|| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 487 tgtcagcattgctgttttcttgattctttatttatgccattctgttcagtaaaaatataa 428
Query: 481 taactgaggaaaatgacagaggacagagggaatctttacttcgaaaaacaaggaatagag 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 taactgaggaaaatgacagaggacagagggaatctttactttgaaaaacaaggaatagag 368
Query: 541 ggaaagcagagaggaggggggaggggagaagttgg 575
|||||||||||||||||||||||||||||||||||
Sbjct: 367 ggaaagcagagaggaggggggaggggagaagttgg 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_k24.g1 MSMg01no463_k24.g1 CHROMAT_FILE:
MSMg01no463_k24.g1 PHD_FILE: MSMg01no463_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:12 2005
(500 letters)
>mm_chr13_8086600_8087499
Length = 900
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%)
Strand = Plus / Plus
Query: 1 ccaattccattctgctcataattttacgaccatattgcagttcctctttttgcatctgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaattccattctgctcataattttacgaccatattgcagttcctctttttgcatctgtc 260
Query: 61 ctattctttattctaattcccatgtttgtaatttgtgtgatgtaattgatggtctttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattctttattctaattcccatgtttgtaatttgtgtgatgtaattgatggtctttagt 320
Query: 121 atgacaatgagcaattaagaaatgcaggccttggtgttcctacagatacaaaaatatccc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacaatgaacaattaagaaatgcaggccttggtgttcctacagatacaaaaatatccc 380
Query: 181 acattctaagctgtattttcccaaggccgttatgagaagggaacacacaagtctaaaatt 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattctaagctgtatttccccaaggccgttatgagaagggaacacacaagtctaaaatt 440
Query: 241 tcttattaaatgtaaaagaactttacttatggaaaagtttcaattttagaaacaaaacct 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttattaaatgtaaaagaattttacttatggaaaagtttcaattttagaaacaaaacct 500
Query: 301 gtaattgagggagcataaaatagtttacattctacttgcacaacaggtttgaaatatgta 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gtaattgagggagcataaaatagtttatattctacttgcacaacaggtttgaaatatgta 560
Query: 361 taaactgtggggtgggggctaatgtatattatttggcatacttacttttatatgaaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaactgtggggtgggggctaatgtatattatttggcatacttacttttatatgaaaaga 620
Query: 421 atactcaaaatctccactctctcaagactgtattacaatagtattaactatacagataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atactcaaaatctccactctctcaagactgtattacaatagtattaactatacagataat 680
Query: 481 acaagttccatagatctcac 500
||| | || |||||||||||
Sbjct: 681 acatgatctatagatctcac 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
