Query= MSMg01no464_b09.b1 MSMg01no464_b09.b1 CHROMAT_FILE:
MSMg01no464_b09.b1 PHD_FILE: MSMg01no464_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:44 2005
(499 letters)
>mm_chr13_38770117_38771016
Length = 900
Score = 851 bits (440), Expect = 0.0
Identities = 485/500 (97%), Gaps = 1/500 (0%)
Strand = Plus / Plus
Query: 1 caacatgaaaacacagatgaggtttcctggaggaaattgtccatttctgcttgggccaag 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 caacatgaaaacacagatgaggtttcctagaggaaattgtccatttctgcttgggccaag 260
Query: 61 aagagagttggacacctctatcttccctggaagagagaccatccttttcctggcccagta 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 aagagagttggacacctccatcttccctggaagagagaccatccttttcctggcccagca 320
Query: 121 atccctgctgctt-tctctaccatccccatggctaagacaggggattaactgccatgttt 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccctgctgcttctctctaccatccccatggctaagacaggggattaactgccatgttt 380
Query: 180 catcccagctagcccatagtttctatttcttacatgacctctgaagggacctacatttgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcccagctagcccatagtttctatttcttacatgacctctgaagggacctacatttgt 440
Query: 240 ggtcttatttaaaagcccatagtgggacctagtattttcccaaatgcccatctctgcact 299
|| || | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ggcctcagataaaagcccatagtgggacctagtattttcccaaatgcccatttctgcact 500
Query: 300 agcctttgtttattatacagagaagcactaatccatttcatgtctacaccccatcttcgt 359
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 agcctttgtttattatacggagaagcactaattcatttcatgtctacaccccatcttcgt 560
Query: 360 ctcaccaagcctttcaaagatgttttaagaggctccttacagacctcagatgtctggatg 419
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 561 ctcaccaagcctttcaaagatgttttaagagtctccttacagacctcagatgtctgtatg 620
Query: 420 acttgtccatctctgtccatcccgaaatgagcgagatttgaagtggcttcttaaatttct 479
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 actcgtccatctctgtccatcccgaaatgagcgagatttaaagtggcttcttaaatttct 680
Query: 480 tagctaaggcaatttctgat 499
||||||||||||||||||||
Sbjct: 681 tagctaaggcaatttctgat 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no464_b09.g1 MSMg01no464_b09.g1 CHROMAT_FILE:
MSMg01no464_b09.g1 PHD_FILE: MSMg01no464_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:44 2005
(232 letters)
>mm_chr13_38886533_38887165
Length = 633
Score = 354 bits (183), Expect = e-102
Identities = 212/222 (95%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 1 catcggaggnttctcacttctgtgcctgtctttttcaagtcttgacatgagtggtttaat 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 catcggaggtttctcacttctgtgcctgtctttttcaagtcttgacatgagtggtttaat 316
Query: 61 ttttatgaaaggaattgaaaag-aaaatctatccatatatagaaatcatccaacatagga 119
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 315 ttttatgaaaggaattgaaaagaaaaatctatccatacatagaaatcatccaacatagga 256
Query: 120 gagaacagtggtttaaagttttgagtgatgtttgctggagtcacctgggatttgatttgt 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 255 gagaacagtggtttaaagttttgagtgatgtttgctggagtcacccgggatttgaggagt 196
Query: 180 gtcatttatttatttatttatttatttatttatttatttatt 221
||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct: 195 gtcgtttatgtatttatgtatttatttatttatttatttatt 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 633
Length adjustment: 9
Effective length of query: 223
Effective length of database: 624
Effective search space: 139152
Effective search space used: 139152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
