BAC Information

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BAC

Clone NameMSMg01-464M12
Chromosome13 (Build37)
Map Location 96,814,041 - 96,814,282
singlet/doubletsinglet
Overlap geneSv2c
Upstream genePde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464M12.T7 (MSMg01no464_m12.b1)MSMg01-464M12.TJ (MSMg01no464_m12.g1)
ACCAG549115AG549116
length748764
length of high quality
(start - end)
57 (260 - 316)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no464_m12.b1 PHD_FILE: MSMg01no464_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:39 2005CHROMAT_FILE: MSMg01no464_m12.g1 PHD_FILE: MSMg01no464_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCAAAAATTTGCGGGCGCTAAAAGAANCACTATTCCACACGAGAGGC
GCGGATTCCACACTTTCCGAACAGCACAGNCNCCAACTAGGCATTAAGAG
GCAACGGACTGGGAAACAGGGTGCGGCGGTACATGCTTAGAATCCCAGCT
CTTGGGAGATAGAGGAGGAAGGATCCGGAGTTCAACACCATTATAAACTG
AGCCGACTCAAGGCCAGCCCGATAACCACGAGACCCTGTCTCATATACTT
CTTATACAACACCAAGCCAAACAACTTGGTACTGTGGAACTAGACTGTTG
TTCATCGAGCTCTTGTTACATCGTTCAGCCAGGGAANACAAGAATATAAG
TAGCCTTCACATTCCTCAGGCTGTCTAGTCCCGAGTTCACCTTATTCAAA
GCATCATGAAGCCGGAACCACCCATATCTACGTGCTTTATCTATACGCCA
TTGTCTCAGTCATACAGAAGAGCTTCTCTCGCATTACCAAGGAGCCGGTC
TCCTTTGTGTGTAGCTCATCCATTTGGAGCCCTGCTTCTCATCCACCCGT
ATTACGCATGCCTTTCTTACTCCCTATTATCTTCCTTTCTAGAGGTCTCT
GGCTGCCTGTATTTTTATCTCTTGTCCTCCAGTGCCTCTGCCTAGTCTTA
TTTCTTTCCTCCCCTTATCTTTCCTATCTCCATCCCCTTTCTAAAGCTGC
CTTCTACCTTACCACTGTTTTTCCTCCTTTTTCCCCCTTCCACCCTTG
NCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTACAGCGAAATTCACCTGTCTCTGCCTCTCAGTGGTGGGA
TTATAGACATATGTTACCAAGCCTGGCTTATTATATGGGTGCTGGGGATG
CAAACTCGGGGTTTCATGACTTCCCTTTACCCACTGTACCACCACCTCAG
CCCCTAGAATAAAATTGTTTTCTGTCACATGTTTACTGAAGAATTATTAG
TGGAACAAAATTACTCAGTAAAATTCTGCAATAATTTGAAAGAGAATGGC
TCCCATAAGTCTCATATTTTTGAATGCTTGGTCCCTAGTTAGTGGAACTG
TTTGGGAAGGATTAAAAGGTGGGTCTTGTGTGTCATTAAGGCCTCGCTGT
TTTGGAGAATTTAGTCAGTGATTGATTGACTCTGTTACTTTGGGGCCTGT
GGCAAAGCAGTACATCAAAAAGAAGGTAGCCTGTGGTAGAGTAAACTGCT
CACCTCATGATAGTTGGGAAGTATAAAAAAAGAGATCTTGGAAGAGAATC
TACATACTCTTTACTAATCAGCACAGCCCCTAAAAAATTAATATTTGTCT
TTATGCTCACAGAGAAATAAAGTCCCCCCATCCATCTATGGAATTTTCCT
TTTTGACATATGAAGACCGCTTCATTATCGCTCTTAATCCACCTAAAAAA
TTACATTTGTGCTATTCTTATCTCTCCCCTGCCATCTTCTAAACGCTCCT
CTCTCCTATTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_m12.g1 MSMg01no464_m12.g1 CHROMAT_FILE:
MSMg01no464_m12.g1 PHD_FILE: MSMg01no464_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:40 2005
         (242 letters)



>mm_chr13_96813708_96814349
          Length = 642

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgtctctgcctctcagtggtgggattatagacatatgttaccaagcctggcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcacctgtctctgcctctcagtggtgggattatagacatatgttaccaagcctggcttat 516

                                                                       
Query: 61  tatatgggtgctggggatgcaaactcggggtttcatgacttccctttacccactgtacca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 515 tatatgggtgctggggatgcaaactcggggtttcatgacttcactttacccactgtacca 456

                                                                       
Query: 121 ccacctcagcccctagaataaaattgttttctgtcacatgtttactgaagaattattagt 180
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||
Sbjct: 455 ccacctcagcccctagaataaaattattttctgtcacatgtttactgaagaattaaaagt 396

                                                                       
Query: 181 ggaacaaaattactcagtaaaattctgcaataatttgaaagagaatggctcccataagtc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct: 395 ggaacaaaattactcagtagaattctgcaataatttgaaagagaatgtcccccataagtc 336

             
Query: 241 tc 242
           ||
Sbjct: 335 tc 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)