BAC Information

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BAC

Clone NameMSMg01-465C10
Chromosome13 (Build37)
Map Location 60,405,494 - 60,406,117
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465C10.T7 (MSMg01no465_c10.b1)MSMg01-465C10.TJ (MSMg01no465_c10.g1)
ACCAG549399AG549400
length749748
length of high quality
(start - end)
571 (63 - 633)293 (316 - 608)
definitionCHROMAT_FILE: MSMg01no465_c10.b1 PHD_FILE: MSMg01no465_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:09 2005CHROMAT_FILE: MSMg01no465_c10.g1 PHD_FILE: MSMg01no465_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCGGAATTCTCT
GGTACCTCCTTTGATTTCCTCCCCATTGTACCAGGGAAAAAAAGTTGCTC
TGTATTGTTTTCCCCTTCTCTATCTGCTGATTCTGACCATACTGGCTAAA
GAGGCTGGACTGGAAGCATTCCATGGCCACAGCAAGCCCTCTAATTGTAC
AGGATACAGTCAGCAGATACGAATCCAAATGAGAAAATCTAATCATCTCC
AGGAATGTGCTTCCCAGAGCACAGAAATAGTTCTTTCAGGAATAAGCATA
ATTCCAACTTATTTTCACACACATGCACACACACACACAAGCACACATAC
ACACACATGCACACACAAATACACACATATAAACACACATATACACACAT
ACACACACAAATACACATGCATACATACATAGACATACATACACACATGT
GCACACACATACACGCACAAACACACATACAAACACACACAAACCACATA
TACACACACAAACATACACACACATACAAACACACACAAACCACATATAT
ACACACACAAACCACATATACACACACATACAAACACACACAAACCACAT
ATACACACACACAAACACACACACAAACATATACCAACATACACACTCAT
ACTAACACACACAAACCACATATACACCCCCACACCAACATACTCCCCCA
TACTAACACACACATGCCGACACACAGACACACTAGCCTAGGAATGTGG
GGTAGGCCTGGGGGNCGCCTGTTTCACACGTGGAGGTGACACTATAGAAG
TACCAAAAAAATTCAGNCCCCAACATCTCACATGACACTCACAACCATCT
GTAACTACTATCCCAGGAGATCCAATGGTTTCTTCTGATCTCTGTAAGAA
TCAGTCACTCACACGGTACAGATACATACATGTAAGCAAACATTCACACC
CACAAAATAATGATGAAAATCACAGCTGTTATGAGGGTAATTATCTGAGT
TTTAAAGTTGGATACAAGGCCCACTTTGTAGGCGGGAGCTCGTGTCCAAC
AGTGTGGGCTTGTTCAAAGACCCATGGCTAGGGGAGCCATTGGCTCTAGG
GATGAGCCTTCTAGGTTTATTTTGCTAAGCTTATTTGTTAAGCTGCATCT
TAATAGTTATGCTTTCTTAATAGCGTTCGCGCGCCCGGCCAGGAAGAACA
CAACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGG
AGCCAGGAGCGCAAACCCCCAGCCCCAAAAGCGAAAGCCACCCCAATAAT
GAAAACCGAAACCCCTTCCCTATTTAGGAGAGTTATATTTCGCCTAGGAC
GCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTTTTTTT
TTAGTGTGAGTACAAGTAGTCGTAAAATACCTTGTGACATGCGCAGATTA
ATTTGCTACCATTTATAACACAGGATGCCAGCGGCATCTTATGACGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_c10.b1 MSMg01no465_c10.b1 CHROMAT_FILE:
MSMg01no465_c10.b1 PHD_FILE: MSMg01no465_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:09 2005
         (571 letters)



>mm_chr13_60405294_60406264
          Length = 971

 Score =  874 bits (452), Expect = 0.0
 Identities = 555/632 (87%), Gaps = 71/632 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttcctccccattgtaccagggaaaaaaagttgctctgtattgttttccccttctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttcctccccattgtaccagggaaaaaaagttgctctgtattgttttccccttctcta 260

                                                                       
Query: 61  tctgctgattctgaccatactggctaaagaggctggactggaagcattccatggccacag 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tctgctgattctgaccatactggctaaagaggctggactggaagtattccatggccacag 320

                                                                       
Query: 121 caagccctctaattgtacaggatacagtcagcagatacgaatccaaatgagaaaatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagccctctaattgtacaggatacagtcagcagatacgaatccaaatgagaaaatctaa 380

                                                                       
Query: 181 tcatctccaggaatgtgcttcccagagcacagaaatagttctttcaggaataagcataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatctccaggaatgtgcttcccagagcacagaaatagttctttcaggaataagcataat 440

                                                                       
Query: 241 tccaacttatttt----cacacacatgcacacaca------------------------- 271
           |||||||||        ||||||||||||||||||                         
Sbjct: 441 tccaactta----aacacacacacatgcacacacaaacacacacatataaaatatactca 496

                                                                       
Query: 272 ------cacacaagcacacataca--------------------cacacatgcacacaca 305
                 ||||||| ||||||||||                    ||||||| ||||||||
Sbjct: 497 tatacacacacaaacacacatacattcacacacacacacacaagcacacatacacacaca 556

                                                                       
Query: 306 aatacacacatataaacacacatatacacacatacacacacaaatacacatgcatacata 365
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aatacacacatacaaacacacatatacacacatacacacacaaatacacatgcatacata 616

                                                                       
Query: 366 catagacatacatacacacatgtgcacacacatacacgcacaaacacacatacaaacaca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 617 catagacatacatacacacatgtgcacacacatacacgcacaaacaca--tacaaacaca 674

                                                                       
Query: 426 cacaaaccacatatacacacacaaacatacacacacatacaaacacacacaaaccacata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cacaaaccacatatacacacacaaacatacacacacatacaaacacacacaaaccacata 734

                                                                       
Query: 486 tatacacaca--------caaaccacatatacacacacatacaaacacacacaaaccaca 537
           || |||||||        ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tacacacacaaacacacacaaaccacatatacacacacatacaaacacacacaaaccaca 794

                                           
Query: 538 tatacacacacacaaacacacacacaaacata 569
           |||||||||||||||||| |||||  ||||||
Sbjct: 795 tatacacacacacaaacatacaca--aacata 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 156
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)