BAC Information

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BAC

Clone NameMSMg01-465L21
Chromosome13 (Build37)
Map Location 71,604,680 - 71,604,983
singlet/doubletsinglet
Overlap genenone
Upstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
Downstream geneLOC100042360, Irx1, LOC100042828, LOC100042832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465L21.T7 (MSMg01no465_l21.b1)MSMg01-465L21.TJ (MSMg01no465_l21.g1)
ACCAG549851AG549852
length777777
length of high quality
(start - end)
277 (35 - 311)246 (65 - 310)
definitionCHROMAT_FILE: MSMg01no465_l21.b1 PHD_FILE: MSMg01no465_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:58 2005CHROMAT_FILE: MSMg01no465_l21.g1 PHD_FILE: MSMg01no465_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCACTAATTTCAGAAGAGCGCGGAATTCCAAGTAT
GTTCACAGAATGCAGGACATGAAGGGGAATCTGTCAGTATCTGAGATGTT
TAAAATTATAGTTTACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACTTCAGCATGAGTAGAGGCTCTAGAATCATG
GAGAATGCCAAGGATATGATAGGAAGGCCACAGAGTCCTCACAATCAAGA
TAGGTTAAAATGAGGCCCCTATTCCAGGTCTGGACTTTTGACAATCTGCA
CCTCAGACAGAAGTCTCAACAAAACAAAGGCCAGGTAACTGATCAACTTT
GCATCTGTGATGGTTTGTCAATGCTACAACCAGGGAGTGGTACTATTAGA
AGGTATGGCCCTGTTGGAGTATGTGTGGCCTTGTTGGAGTAGGAGTGTCA
CTGTGAGCATGGCCTTCCTCCTAGCTGCCTGGAAATGAGTCTTCTAGCTA
CCTTTGGAACAACTTGAAGAACTCTCAGCTCCTCCTGGACTATGCCTGCC
TGAATAAAGCCATGTTCCAGCCTTGATGACAATGGACTGAACCTCTGAAA
CCGGAAACCAGCCCCAATAAAATGGTGTTCTTAAAAAAATGGCCTTGGAC
ACGGTATAACGTCCAAAACACCAAAAACCCCAATTTATATAGATACCTTC
AATAAAAGTTGTTCTCGGCCGAGGGATAAAAATAATAAAACACCACTGAC
TCCATTATTAATGGTATCTTCTTTACC
GAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTACTTTCCTGTAGTTCTTTGAGTAGGGTTGGGAT
CTCCTGGGCTTTCCCCTGCCCACTTCATCATGACTATTGCTGTTGTCCTT
TTTCAGCGTGTGTTTAGGCAGCCATGTTAAATCTTTATGGGCGTAGCTTC
TGACATTACTAAGAGACACAATTTCACAGCAAACTCCTTGGTCCTCTGGT
TCTTTTTTCAGCCTCCTTTCCTTCCTTCCCCATTGTTGATCTTTCAAAAC
TCAGATTCTATGTTTTTCCCTTTCTCAGCCCTGGTACCCATGTTCAGAGA
CCCCATGTCAGGATGCCAGTTAGCCTTTCTGGTTCTGTGTCTGGCTCAAC
ATTTGTTATTGTGCCCTATAGACTCAGCATGGAGTGTCAGAGTCTTCTTC
ATTGCTGAACACTATTTCCCAATATGCACATACAGCATTGTGTTATCAGA
TTCCACCTTAACCATACTTCTCATTATTGTAAAAATAGTCTCGTCACTAA
CATGGACATAACTTGTTTATATAGGAGTTTATCTTGAAACTTCCCCCTGC
GGTGGCCCCTCTTAGGATCCCCATCCTCTCCAGGACATTAGGAAACGGGT
TATTAAGTGTGGTTCCGGAATTCTTTTATGGTTATTACTTCCAAAAAGAA
CATTTAATCGGTTTTTTTTAATTTTTCCCAAACTTTCCCAAAAAGGTGTC
CTCTCTTTTTTTATTCTCCCCCTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_l21.b1 MSMg01no465_l21.b1 CHROMAT_FILE:
MSMg01no465_l21.b1 PHD_FILE: MSMg01no465_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:58 2005
         (277 letters)



>mm_chr13_71604507_71605183
          Length = 677

 Score =  420 bits (217), Expect = e-122
 Identities = 269/305 (88%), Gaps = 32/305 (10%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccaagtat-gttcacagaatgcaggacatgaaggggaatctgtcagtatctgaga 62
           |||||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gaattccaggtatggtt-atagaatgcaggacatgaaggggaatctgtcagtatctgaga 232

                                                                       
Query: 63  tgtttaaaattatagttta--cacacacacacacacacacacacacaca----------- 109
            ||||||||||||||||||  ||||||||||||||||||||||||||||           
Sbjct: 233 ggtttaaaattatagtttatacacacacacacacacacacacacacacatacacacacac 292

                                                                       
Query: 110 -----------------cacacacacacacacacacacacacacttcagcatgagtagag 152
                            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acacacacacacacacacacacacacacacacacacacacacacttcagcatgagtagag 352

                                                                       
Query: 153 gctctagaatcatggagaatgccaaggatatgataggaaggccacagagtcctcacaatc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gctctagaatcatggagaatgccaaggatatgataggaaggccacagagtcctcacaatc 412

                                                                       
Query: 213 aagataggttaaaatgaggcccctattccaggtctggacttttgacaatctgcacctcag 272
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aagataagttaaaatgaggcccctattccaggtctggacttttgacaatctgcacctcag 472

                
Query: 273 acaga 277
           |||||
Sbjct: 473 acaga 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)