BAC Information

Click to search

BAC

Clone NameMSMg01-465M10
Chromosome13 (Build37)
Map Location 11,011,333 - 11,011,559
singlet/doubletsinglet
Overlap genenone
Upstream geneChrm3
Downstream geneLOC100039648, Zp4, Ryr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M10.T7 (MSMg01no465_m10.b1)MSMg01-465M10.TJ (MSMg01no465_m10.g1)
ACCAG549877AG549878
length762756
length of high quality
(start - end)		227 (315 - 541)549 (67 - 615)
definitionCHROMAT_FILE: MSMg01no465_m10.b1 PHD_FILE: MSMg01no465_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:01 2005CHROMAT_FILE: MSMg01no465_m10.g1 PHD_FILE: MSMg01no465_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGCNGGAATCTCA
AATACAATCATCGGGCTATCTATCTGTCTGTCTGTTTGTGGATATTCATG
AAATTATTGTATATATGTATGTACTTATATATCTTTGAGTAGAGGCAAAT
TGAGGACACCGCCCTGAACCTTACATTTCTATCATCTACTAGAATATTGT
GAGTGCTCGTCAATGTCAGTATGTGTATATTTACATTATTCACCAAGATG
ACAGCTATTTTTTCTAAGTTTCTTTGTGGGAAATAATATAAACTACCATA
GTCTCTTCTTTTCTGTAGTTTAAAGCAAGAGAAGTGTTTCTTTTTATAGT
CACAGAAAATCCAGTTACCCATGAATCACTTGTACCTGAATTGATTTAGA
AGCCTGGATGCTCCATTTGTGTCTTTGCCATTCTGACAAAGGCTACACTT
TGGACCTTTCCAAGTAGCCAAGAGACTGGGCCACAGGAGAGATGAGATGG
AACATGCTCCAAGTCACATGCGATGTCAATCACCAGCTCTGTTTCTCTTC
ACTTACAATATCTAGCTGCACACCAACTCTGTTTTACTGAGACAACAGGA
ACACAAACCTGTATAGGTGACCAAAACAAAGAGCAGGCACAGCCAGTTCT
TCCCCAGTTAGTTTCCGCTCTGTTAAACAATGAAAGGGCGTAATAGGGAC
CTATTAATTTCCGGCCAGCGCGGGCTTTTAAATTTATTAATCCATCCTTA
TTGTCGCTCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATGAAAATGAATTAAAAATAAATCCAAATTTAT
AAGACATAATGAAAGCAGCTAAGAGAAAAGTTGATAGCACTAAAAGCCTT
CATAAAGAAATTGGAGAGATCTCAAACGAGTAATGTAAAAACTCACCTGA
AAGCTCTAGAACAAAAAGAAGCAAACACACCCAAGAGAGGTAGATGGCAT
GAAATAATCAAACTCAAGCCTGAAAAAAAAATCCATTATAAACAAAGAGA
ACAATTCTTATTTTCGACAAAATCAAGAGCTGGTTCTTTGAGAAAATCAA
CAAAAAGCACACACCCTTAACCAAACTAAATAAATGCAGAGACAATATCC
AAATTAAGAAAAGCAGAAATAAAAAGGGGAATATATGCCCAGGAGAAATA
TTGCGGGATCCTCGTGTAGTAGTACTATGTGCAATTTTCTGAGGAACCGC
CAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATG
GATGAATGTTCCTTTTTCTCCACATCCTTGCCAGCATCTGCTCTCACCTG
AATTTTTGACTGGTGTGAGGTGGAATCTCAGGGCTGCTTTGATTTGAATT
TCCCTGACGTATAAGGATGTTGAAAATTTTTTCAGGTGCTTCTCTGTCAT
CCGGTATTCCTCACCTGAAAATTCTTTGGTTAAATCTGAAGTCCCATTCT
TTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m10.b1 MSMg01no465_m10.b1 CHROMAT_FILE:
MSMg01no465_m10.b1 PHD_FILE: MSMg01no465_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:01 2005
         (227 letters)



>mm_chr13_11011133_11011759
          Length = 627

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagtttaaagcaagagaagtgtttctttttatagtcacagaaaatccagttacccatga 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtagtttaaagcaacagaagtgtttctttttatagtcacagaaaatccagttacccatga 368

                                                                       
Query: 61  atcacttgtacctgaattgatttagaagcctggatgctccatttgtgtctttgccattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atcacttgtacctgaattgatttagaagcctggatgctccatttgtgtctttgccattct 308

                                                                       
Query: 121 gacaaaggctacactttggacctttccaagtagccaagagactgggccacaggagagatg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gacaaaggctacactttgtacctttccaagtagccaagagactgggccacaggagagatg 248

                                                          
Query: 181 agatggaacatgctccaagtcacatgcgatgtcaatcaccagctctg 227
           |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 247 agatggaacatgctccaagtcaaatgcgatgtcaatcaccagctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |