BAC Information

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BAC

Clone NameMSMg01-466E24
Chromosome13 (Build37)
Map Location 16,411,477 - 16,411,911
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466E24.T7 (MSMg01no466_e24.b1)MSMg01-466E24.TJ (MSMg01no466_e24.g1)
ACCAG550288AG550289
length771763
length of high quality
(start - end)
367 (74 - 440)435 (84 - 518)
definitionCHROMAT_FILE: MSMg01no466_e24.b1 PHD_FILE: MSMg01no466_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:45 2005CHROMAT_FILE: MSMg01no466_e24.g1 PHD_FILE: MSMg01no466_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTATCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCACTACCTCAATCTGGTCCTGGATTTTTTTTTTTTT
TTTTTTGGTTGAGAGCCTTTTAATGACTGCTTCTATTTCTTTGGGGGTTA
TGGAACTGTTTACATGGTTTATCTGATCCTGCTTCAACTTTGGCACCTGC
TATCTGGCTAGAAAATTGCCCATTTCATCCAGATTTTCCAGTTGTGTTGA
GTATAGGCTTTTGTCGCAGGATCTAATGATTTTTTTTGAATTTCCTCAAT
TTCTGTTGTTATGTCTCCCTTTTCATATCTAATTTTGTTAATTTGGATAC
TGTCTCTGTGCCCTCTGGTTAATCTGGCTAACGGTTTCTTTATCTTATTG
ATTTTCTCAAAGAACCAGCTACTGGTTTTGTTTTTTGTACACTTCTTTTT
GTTCCTACTTGGTTGATTCCCGCTTTTATTTTTGATTAATTTCTGCCCTC
TACTTTTCTTGCTGAATTTCCTACTTTTTTTCTCCCCTCCTTCCCCTGTT
GCTTTTTACTTTTTACTATCCCATATTCCCTCTTCTTGTCTTTTTTTTTC
CCTTTTCTCTCTTTTTTTTTTTACTTCTTCCTTCCCACTTTCTTTCTTTT
TTTTTTATTTCCCCCCCTTATCTATAATATTTATCCTTCTTTTCTTTCCC
CCCCCTCTTCTCCTTATCCCCTTCTTTTTCCCATTTTCTTTTTTCTTCTC
CCTCCCATCTCTTTGTCTTTC
TAATTATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCACAGGGCTGAGG
TTTCCACTGCAGGATTCCCAGGATCATTAATGAAAATCGTGTGGCTGGGT
CATGTCACATCTGCTCAGAACTCTGCCTGAAGTGTCCTCATTGTGCAAAC
GTTGGGAGCTCACAAGCACTGGGTTGAATTAGTATGCTCTTCTCTGGGTG
CCAGTCCTTGCCTTGTTCTTTCAGTCCATCTATTTGAGCATGCGCCTTTG
CTTTTATTTTGCTCTGTTTGTCTCATGTTATTTTTGAGCCATCAAAGAGA
AGGGCAAGGCACAAAAAGAGAAAGAAAAGAACGATGGCCATCAAATGTAT
CAGTTCCATTGCCACTGGTGTGGTACTGTCCTTTGTAGGAAGATGACTTA
AATTGGGTTTTGTACAGTGTGACAGAAATAAGTTGCCACCCTTCTTACCA
CCTGAACTTGATTCTTCATGAGAACTTAAAGGCTAACAGAACCCATCGTG
AAGAGAACTGGAGAAGAATCACGGTGTGACACTCCACAACACTGAAACTT
GCCACCTATGAAACTGTCTTATTTTAAACGGCGTTCAAAGGTCTTTATTT
TCTTTAAAAATAAATATTGTGTGTTTTTTAAAAATTCTCTCCTTGTTACT
TGTGTTTTTTTTTTAATATCATAAAATAATCTATTTTCTTTATTCTCCTC
CCTATGTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_e24.g1 MSMg01no466_e24.g1 CHROMAT_FILE:
MSMg01no466_e24.g1 PHD_FILE: MSMg01no466_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:45 2005
         (435 letters)



>mm_chr13_16411277_16412111
          Length = 835

 Score =  818 bits (423), Expect = 0.0
 Identities = 432/435 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcacagggctgaggtttccactgcaggattcccaggatcattaatgaaaatcgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcacagggctgaggtttccactgcaggattcccaggatcattaatgaaaatcgtgtg 260

                                                                       
Query: 61  gctgggtcatgtcacatctgctcagaactctgcctgaagtgtcctcattgtgcaaacgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggtcatgtcacatctgctcagaactctgcctgaagtgtcctcattgtgcaaacgtt 320

                                                                       
Query: 121 gggagctcacaagcactgggttgaattagtatgctcttctctgggtgccagtccttgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagctcacaagcactgggttgaattagtatgctcttctctgggtgccagtccttgcct 380

                                                                       
Query: 181 tgttctttcagtccatctatttgagcatgcgcctttgcttttattttgctctgtttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tgttctttcagtccatctatttgagcatgcgcctttgcttttattttgctctgtttgcct 440

                                                                       
Query: 241 catgttatttttgagccatcaaagagaagggcaaggcacaaaaagagaaagaaaagaacg 300
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 caggttatttttgagccatcaaagagaagggcaaggcacaaaaagagaaagaaaagaatg 500

                                                                       
Query: 301 atggccatcaaatgtatcagttccattgccactggtgtggtactgtcctttgtaggaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggccatcaaatgtatcagttccattgccactggtgtggtactgtcctttgtaggaaga 560

                                                                       
Query: 361 tgacttaaattgggttttgtacagtgtgacagaaataagttgccacccttcttaccacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacttaaattgggttttgtacagtgtgacagaaataagttgccacccttcttaccacct 620

                          
Query: 421 gaacttgattcttca 435
           |||||||||||||||
Sbjct: 621 gaacttgattcttca 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)