BAC Information

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BAC

Clone NameMSMg01-467D05
Chromosome13 (Build37)
Map Location 67,958,302 - 67,958,723
singlet/doubletsinglet
Overlap genenone
Upstream geneEG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273
Downstream geneBC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467D05.T7 (MSMg01no467_d05.b1)MSMg01-467D05.TJ (MSMg01no467_d05.g1)
ACCAG550967AG550968
length722715
length of high quality
(start - end)
244 (74 - 317)423 (79 - 501)
definitionCHROMAT_FILE: MSMg01no467_d05.b1 PHD_FILE: MSMg01no467_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:59 2005CHROMAT_FILE: MSMg01no467_d05.g1 PHD_FILE: MSMg01no467_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATGCGCGGA
ATTCTGCATGGGTGCCCCTCCCCCACTCACTGAAGTAGAGAGAGCTTTAG
ATCCTTTAAAATTAAACCCTGGTCCTTCATTGTCTACACGCATGAAAGTC
CTAGAAGTGGTCAGAAACACCGCCTGAAAGCAGCTCAAATAGGCCTACTA
ACCAGGAGACTTGATGATACCACACCAGTTCCAAGTAGGAGATGCAGTTC
TCATCTGAAGACATCAAGCTGAGGATCTAAAACCTTGTTAGAAAGGCCCT
TGCATCATGCTGCTGACCATTTTTACTGCTGTCAAAGTAGAAGACATCTC
AGCTTAGATTCATGCCTTTCATGTAAAGCGAGCTCCTGAAGAATAAATCC
CCTTGGTTGACCACCCTCATTTCTACTCTGATAGACACTCTAATAATTTT
GCTCTTTCTGCTGATGTGTGGTCCGATAGCTCTTAATAAATTGGTGACCT
TTATTAGAGAGAAAATTGGTGCTGTCCAGCTGTTAGTACTAAGACAACTA
TATCAGTCTCTGCAGAAGCTTAAAGAATACACTGCAGTCTACTTCTAAGA
TTAGAATCAGTACATATAATAAGTGTTGCATGACTGATCCTGACTTGTTG
TATTATGTCATATAATTCCCGATTTTTGTTCAATTCCCGTCCTTGTTTTT
TAACCTTTCTTTCCTTGTTTTN
TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCTCTCCAGTGGAAGTTCC
TAGAAGGATAGAGACTTTCTCAAACTGGCCTAGTGAAACTTACCAACTCC
TTAAGGCACTCCTCACCCCATTAACATACTAATATGTTAGTAAAAGCTGG
CTGTTAGAGCACCAAGAGCAGCATCCCCTGGTGAGACAGTTGGTGAGCCA
TGCAAGGGCCTTGGTTACTTTGCATATCAATACTCAGCCAGGCCAAGCTA
AGGTTTCCCAAAAGGCAGGTCTCTTTTTCATTTATTTATTTATTTATTTT
TGTTTTCTCTACAGTTTTTAAACTGGTAGATAGGAGTATAAGGAAAAGAG
GTGGTCCCTTCCTAGGACCGGGTGAGGAAGAGAAAGAGGAGCCTACCAAG
GTCCCAGGATTCTCTCCAGTGACCGCCCCCCCCCCTATACCCTACCTTTT
AAGGTTGTTATTGCCTTCCAAGTAGGAGGCCTAAGCCGTTAATGAGTTGG
AAGGTATCTTATATCCCCTCCCTGCCATTTTATATTTGGATACTCCTATA
GTCCAGTTTGTATGAATATATTGGCCTTTTGTAATTTTCTCTCCCCTCCC
TGTTTACATTGTCTTTCTTCACCCGAGTGTTTTTAACTTCTTTAACTTTC
TGCTTTCCTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_d05.g1 MSMg01no467_d05.g1 CHROMAT_FILE:
MSMg01no467_d05.g1 PHD_FILE: MSMg01no467_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:00 2005
         (423 letters)



>mm_chr13_67958102_67958923
          Length = 822

 Score =  810 bits (419), Expect = 0.0
 Identities = 422/423 (99%), Gaps = 1/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctctccagtggaagttcctagaaggatagagactttctcaaactggcctagtgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctctccagtggaagttcctagaaggatagagactttctcaaactggcctagtgaaa 260

                                                                       
Query: 61  cttaccaactccttaaggcactcctcaccccattaacatactaatatgttagtaaaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaccaactccttaaggcactcctcaccccattaacatactaatatgttagtaaaagct 320

                                                                       
Query: 121 ggctgttagagcaccaagagcagcatcccctggtgagacagttggtgagccatgcaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgttagagcaccaagagcagcatcccctggtgagacagttggtgagccatgcaaggg 380

                                                                       
Query: 181 ccttggttactttgcatatcaatactcagccaggccaagctaaggtttcccaaaaggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttggttactttgcatatcaatactcagccaggccaagctaaggtttcccaaaaggcag 440

                                                                       
Query: 241 gtctctttttcatttatttatttatttatttttgttttctctacagtttttaaactggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctctttttcatttatttatttatttatttttgttttctctacagtttttaaactggta 500

                                                                       
Query: 301 gataggagtataaggaaaagaggtggtcccttcctaggaccgggtgaggaagagaaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gataggagtataaggaaaagaggtggtcccttcctaggaccgggtgaggaagagaaagag 560

                                                                       
Query: 361 gagcctaccaaggtcccaggattctctccagtgaccgcccccccccctataccctacctt 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 gagcctaccaaggtcccaggattctctccagtgaccgccccccccc-tataccctacctt 619

              
Query: 421 tta 423
           |||
Sbjct: 620 tta 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)