BAC Information

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BAC

Clone NameMSMg01-467I21
Chromosome13 (Build37)
Map Location 28,406,861 - 28,407,273
singlet/doubletsinglet
Overlap genenone
Upstream genePrl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
Downstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467I21.T7 (MSMg01no467_i21.b1)MSMg01-467I21.TJ (MSMg01no467_i21.g1)
ACCAG551236AG551237
length955752
length of high quality
(start - end)
167 (65 - 231)413 (70 - 482)
definitionCHROMAT_FILE: MSMg01no467_i21.b1 PHD_FILE: MSMg01no467_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:28 2005CHROMAT_FILE: MSMg01no467_i21.g1 PHD_FILE: MSMg01no467_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
AAGGGTTTCTTGAGTTTCCTCTTTAAGGTCTTCTACCTGCTCCCCTGTTT
TCTCCTGTATTTCTTTAAGGGAATTATTTATGTCCTTCTTTAAAGTCTTC
CAACAGCATCATGAGATGTGATTTTTAAATCCAAATTTTGCTTTTCCCAT
GTGTTGGGGTATCCATGACTTGCTGTTGTGGCAGAACTTGTTTCTGATGA
TGCCATGTTGTCCTGATTTCTGTTTTATATTTCCTTGTGCCAGACGCGCT
ATATATGCTTTTTTTTTTTTTTTTCATTAGGTCTCGCATTTCTCAGTCTC
CCCCGTTTTTCTTCCCTCTGTTTCTTTAGTTGGTTCTCACACTTCTCCCC
CCTTCCTTTCTTTTCTTAGTCCCCCCCCACCCACCCCCCTTTATTTTGTT
CATTATTCATTTTCTTCTTCTCACCCTCCCATCATTTTCCTGTTCTTACT
CCACAATTCTTCTCTTATCTCCTTTTTTTCCATCCATTTTCCCCTCCTCT
ACTCTCTTCCCCTTTATACTCCTCTCTCAATTCATTTCATCACTCCTCCC
TACTTCTCTCCCTCTCTCTCAATTCTCTACCACTACCTTCTCTCCTCTCC
CCTTCTCCTCTCACCTCTTTAATACCACATTCTTACCTCATATCATACCA
AATTCTTACTACCCACAGTCTATCTCTACCTCCACATCCTCTCTATACCT
TCCATTCATATATACTCTCTTTTTTTTCTATCACCTATCTATCCTTGACT
TCATGTTCTTTGCCACGCATTAATCTTCACTTTCATTCCATCTCGCTTCT
CTTTTGTTCTCACACTCTATTTCTCCTATTCCCTCTATATTTTTCTCCAT
CATTCTATATCACTTCTCTCTACCCTCTTTCCCACCTATTCTTTACTTCC
ATTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGAGTGCTGCCAGAATGGCTGTCTCAGAC
TCTACGTGTCAGAGACATCATTCTTAAGTCTTTAAGGAAGTTATTTCAGA
ACCACTTAGGAAACATCCTCATTAAATCACATGGTAGGAATTGCCAAGTG
ATAGCCAGGAGGACTGCTGGCTGACAGGCATTAAAGTAAAGTTTATTGCA
GTGTAATTCTTCTGGACAGGGGCAGGGACGATCCCAGCCATCTGCGGTAC
ATCACAGCGAGTATGTGACCAGATGCCAGTCCAACAGAAGAAATAACTGA
CAGGCAGCCAAGGCTGTGTGGCAGTTCGATACTAGTGAGTAAGAGCAGCA
ATCACATCTTGCTAAGCTCAGGGTGGATGACAAGAGTGATGCCTCCCTGT
TGTTTGGTTCTGCACACTGGNGTAAGGCAGGTTTGAGCTAATTTATTCTC
AGATACAGAAGGCTGTAGTGAGTCTGTTGTAGGAGTCCAAATCGGAACCC
CGTTAGGAGCCGCCTTGCGAAAAGCACCCATAAAGGTTTAACGAATATTT
TTGTCCTCTAGACCTGTTGTCTCTTGTTAATAGTTTATTCTCCTAGGCTT
TTTTTTCTTTTCCCCTCCGGCTCCCTTTAATTCTTTTGTCATTTTTCCCC
CCCTTTTCCACTCTTTTCCGCGCCTTTTCCTTCCTTGTTCTTCCTTTTCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_i21.g1 MSMg01no467_i21.g1 CHROMAT_FILE:
MSMg01no467_i21.g1 PHD_FILE: MSMg01no467_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:28 2005
         (413 letters)



>mm_chr13_28406661_28407473
          Length = 813

 Score =  785 bits (406), Expect = 0.0
 Identities = 411/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagagtgctgccagaatggctgtctcagactctacgtgtcagagacatcattcttaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agagagtgctgccagaatggctgtctcagactctacgtgtcagagacatcattcttaagt 554

                                                                       
Query: 61  ctttaaggaagttatttcagaaccacttaggaaacatcctcattaaatcacatggtagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctttaaggaagttatttcagaaccacttaggaaacatcctcattaaatcacatggtagga 494

                                                                       
Query: 121 attgccaagtgatagccaggaggactgctggctgacaggcattaaagtaaagtttattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 attgccaagtgatagccaggaggactgctggctgacaggcattaaagtaaagtttattgc 434

                                                                       
Query: 181 agtgtaattcttctggacaggggcagggacgatcccagccatctgcggtacatcacagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtgtaattcttctggacaggggcagggacgatcccagccatctgcggtacatcacagcg 374

                                                                       
Query: 241 agtatgtgaccagatgccagtccaacagaagaaataactgacaggcagccaaggctgtgt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtaggtgaccagatgccagtccaacagaagaaataactgacaggcagccaaggctgtgt 314

                                                                       
Query: 301 ggcagttcgatactagtgagtaagagcagcaatcacatcttgctaagctcagggtggatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggcagttcgatactagtgagtaagagcagcaatcacatcttgctaagctcagggtggatg 254

                                                                
Query: 361 acaagagtgatgcctccctgttgtttggttctgcacactggngtaaggcaggt 413
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 253 acaagagtgatgcctccctgttgtttggttctgcacactggggtaaggcaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)