Query= MSMg01no468_c13.b1 MSMg01no468_c13.b1 CHROMAT_FILE:
MSMg01no468_c13.b1 PHD_FILE: MSMg01no468_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:15 2005
(278 letters)
>mm_chr13_8054719_8055396
Length = 678
Score = 491 bits (254), Expect = e-143
Identities = 271/280 (96%), Gaps = 7/280 (2%)
Strand = Plus / Plus
Query: 3 ggaattcactacgtgatcccc----ctgaaccttgaactcctcatcctcttctcttcggt 58
|||||||||||||||| || |||||| ||||||||||||||||||||||||||||
Sbjct: 202 ggaattcactacgtga---ccaatactgaactttgaactcctcatcctcttctcttcggt 258
Query: 59 ttctaaaagttgggattgctggcgtttgctaccatgcccggctcacagggtacttcatgt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttctaaaagttgggattgctggcgtttgctaccatgcccggctcacagggtacttcatgt 318
Query: 119 cggttcccttcatttgaaggataaaacatttttgaaaagaatatttcatttccacagaca 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cggttcccttcatttgaacgataaaacatttttgaaaagaatatttcatttccacagaca 378
Query: 179 ttgttgagcttacatcaagtagaagaatttgtaagttaagatcattatgcaaccctttga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgttgagcttacatcaagtagaagaatttgtaagttaagatcattatgcaaccctttga 438
Query: 239 aatttgtaagatctaaagggtaggaaagatttagaaagaa 278
||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatttgtaagatctaaagggtaggaaagatttagaaagaa 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space: 179961
Effective search space used: 179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no468_c13.g1 MSMg01no468_c13.g1 CHROMAT_FILE:
MSMg01no468_c13.g1 PHD_FILE: MSMg01no468_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:15 2005
(410 letters)
>mm_chr13_8236672_8237481
Length = 810
Score = 648 bits (335), Expect = 0.0
Identities = 396/433 (91%), Gaps = 28/433 (6%)
Strand = Plus / Minus
Query: 3 caatggcctcctaactgaaggtttatcccagatgaggtcacaaaggagaagcagggttat 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 432 caatggcctcctaactgaaggtttatcccagatgaggccacaaaggagaagcagggttat 373
Query: 63 ggagtcatgagaagttgagaatgggcagctacttataagagttctgtacatgaaactaaa 122
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 372 ggagtcatgagaagttgagaatgggcagctacttacgagagttctttacatgaaactaaa 313
Query: 123 ctggggaattttaactccttctctcagaacaactacacatgcactttagaaatgattaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctggggaattttaactccttctctcagaacaactacacatgcactttagaaatgattaag 253
Query: 183 ctctactaggcaatgcgctggaggtatcatccttactccactcctta------------- 229
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctctactaggcaatgcgctggaggtatcatccttactccactccttatgcaagaatctta 193
Query: 230 -tgccctagtcattaatttcttacaggtcgctccacccttctgtgtgatttttttttttt 288
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 192 ttgccctagtcattaatttcttacaggtcgctccacccttatgtgtgatttttttttt-- 135
Query: 289 gccctagtctactattagtttgctggctttcaactgaactctagaactcttgtcttt--- 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 -ccctagtctactattagtttgctggctttcaactgaactctagaactcttgtctttata 76
Query: 346 --------tatataaatatcattatcatttcctttttgttcccccaaacagaactgtatc 397
|||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 75 tatatatatatatatatatcattataatttcctttttgttcccccaaacagaaatgtatc 16
Query: 398 cactttgactagt 410
|||| ||||||||
Sbjct: 15 cactctgactagt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
