BAC Information

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BAC

Clone NameMSMg01-468F19
Chromosome13 (Build37)
Map Location 67,584,267 - 67,584,514
singlet/doubletsinglet
Overlap gene9630025I21Rik
Upstream geneC330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098
Downstream geneZfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468F19.T7 (MSMg01no468_f19.b1)MSMg01-468F19.TJ (MSMg01no468_f19.g1)
ACCAG551852AG551853
length783783
length of high quality
(start - end)
248 (77 - 324)375 (75 - 449)
definitionCHROMAT_FILE: MSMg01no468_f19.b1 PHD_FILE: MSMg01no468_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:33 2005CHROMAT_FILE: MSMg01no468_f19.g1 PHD_FILE: MSMg01no468_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCATCCG
CGGAATTCTTTAANGTTACAACACAGTTGTCTCAACTTGGGATGGTCTGC
TTCATAAGGCATTATATTTTTTGTTTGTTTTCTGAGCAAGCACAGCTAAG
AGAGATTAAAAAAAGCAGAATGCATGTCCGGTTACTATTGTTTGCTGTTT
GTTTTTGTTGCTGTGTTGTACAACGCTCAGTTGGAAATGGAGCTAGTCTT
TAATTCATCGCACATGCAGTTATTCTTGTCTTGCTTTGAGGTGACAGAAC
TTGCTAGGTTCCAGGGTCAGAGTCTTGTTTTTTAGCATTGTTGTACGTGA
TATTTATCCCACTTTCTTTGAAATGAATTGTGGATTTAAAGAAGATTCAC
TTGGAATAGGAATCCCTCATGGAGGCTGTTCAGTTCCTCACTTGAAAGTA
GCTTGACACCCATGTTTGCTAAAAGGATATTGAGCTGTTTCTCTTTTTTT
TTTTTTCTTCTTCTTTTGCGCTTCTCCATACCTCTTTTTTCTGTATATTC
TTTTTTTTTTCTTTTATTTTTTTTCGCTACCTTCTCTTCCTTCCCATTCA
ATCTCTTCTCTTCTCTTTCCTTTATTTTCATTTTCACCTTTCTTCTATCC
CTCCTCCTGCTTTCCTTTCTCTTTTTTCTTCTCCCGAATCATCTTCATCC
TCATCTACCCTTTCTTCATTCCTCCCCACTTACCATTCTCCCCTTTTACT
CATATTATTTACTACCTTATTCATCTCTACCAT
NCCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTATGTTCAGAAAGGGATGATGGA
AAACGGAAGACATTTCCACATATTTCACACTTGTATGGTTTCTCTCCTGT
ATGAATTTTCTTATGGTTGGAAAGTCTTGATGGGTAATGAAAGGCCTTGT
CACATACTTCACACTTATAGGGCTTTTCTCCAATATGAATTATCTTGTGT
TTAGAAAGTAATGATGCATAATGGAAGGCCTTGCCACATATGTCACACTG
GTATGGTTTCTCTTCTGTATGATCTTTCTTATGGTTGGAAAGTCTTGATG
GATAATCAAATGCTTTGCCACATACTTCACACTTGTAGGGATTATCTTCT
GTATGAATTGTCTTGTGTTTAGAAAGTATGGATGGATAATGGAAGGCCTT
GCCACATACTTCACACTTGTATGGTTTCTCTCCGGCATGAATTTTCTTAT
GGTTGCAAAGTCTTGATGAATAATGTAAGGCCTTTGCCCACACTTCACAC
TTCGTTAATCTCTTCCCCTGTGTCACTTCTCCTTCTTTTTACAACACTAA
CTTTCTCTCTGTTATCCCTATTCCATCATTTTTCTACTTATTTTTATGTC
CTACCCGTCTTTGTTTTTTTTTTTTTTCACTATCTATACCACATCTCTAT
ATTTTCCTTTTTTTTATCTATACTCCTCTTACGTCCTCCTAATTTTTCAA
ACCTACTCCTATATATTCTTTTACAATATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_f19.b1 MSMg01no468_f19.b1 CHROMAT_FILE:
MSMg01no468_f19.b1 PHD_FILE: MSMg01no468_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:33 2005
         (248 letters)



>mm_chr13_67584067_67584714
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtctcaacttgggatggtctgcttcataaggcattatattttttgtttgttttctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttgtctcaacttgggatggtctgcttcataaggcattatattttttgtttgttttctgag 389

                                                                       
Query: 61  caagcacagctaagagagattaaaaaaagcagaatgcatgtccggttactattgtttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caagcacagctaagagagattaaaaaaagcagaatgcatgtccggttactattgtttgct 329

                                                                       
Query: 121 gtttgtttttgttgctgtgttgtacaacgctcagttggaaatggagctagtctttaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtttgtttttgttgctgtgttgtacaacgctcagttggaaatggagctagtctttaattc 269

                                                                       
Query: 181 atcgcacatgcagttattcttgtcttgctttgaggtgacagaacttgctaggttccaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atcgcacatgcagttattcttgtcttgctttgaggtgacagaacttgctaggttccaggg 209

                   
Query: 241 tcagagtc 248
           ||||||||
Sbjct: 208 tcagagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)