BAC Information

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BAC

Clone NameMSMg01-468F20
Chromosome13 (Build37)
Map Location 74,104,395 - 74,104,643
singlet/doubletsinglet
Overlap geneZdhhc11
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9
Downstream geneLOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468F20.T7 (MSMg01no468_f20.b1)MSMg01-468F20.TJ (MSMg01no468_f20.g1)
ACCAG551854AG551855
length833785
length of high quality
(start - end)
249 (78 - 326)458 (79 - 536)
definitionCHROMAT_FILE: MSMg01no468_f20.b1 PHD_FILE: MSMg01no468_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:33 2005CHROMAT_FILE: MSMg01no468_f20.g1 PHD_FILE: MSMg01no468_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGC
GGAATTCAATGTAGCTGCCAAAAAGATATTCAGGTTTTCTGCTTCATCTT
ATGTTCATTTTAGTAAGGCGTGTTTCTCATGAAATTTCTTAGAATGTCTA
AGAAAATGTCAAATTTCTTAGAATAAAATTAGTCACAATATGTCCTATGC
TTTTCATTTTCTCTCTGAAGGATACAATTTTTTTGGACAGGATTTTCTGT
ATAGCCCAATATGGCTATCAACTTGTGGTCCTCCAGGCTCAGCCTCTCAA
GTGATAGAATTAGGTGTGTATTACATTTTTTGACATATAGTAACATGTCT
TCATTGGCTGCCTTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTTTTCTCTCCCCCTTCCTTTCTTTTTTTCTTCTTCTC
TATTTTTTCTTCCTTTCTTCCCTTCTTTCCTTCTTTCCCTTTCTTTCTTA
TTTTTCTTTCTTTTTTCCCCTCCTTCTTTTTTTTTCCTTCTATTCTTCCT
TTCCTAATTCTTCCTTCTATTTTTTTCACTCTCTTTTTATCTCCTTATTT
TCCATCCTCTCTTTTTTTTTTTTTTTCTATATCTAATTTTTCTATCTTTT
TCTTTCTTTTCTCTCATTCTCCTTCTTCTTCATACCCATATTTTTTATAT
TCAATACACCCCCAATTAACAATTCATTCAACTATCTTAATTCTTCTTTT
CTTTTTTCTTTACCTCCACCTTAACTTCAAATCTTCTCCTCCTATTTCTA
TCACCCCATTTATCTTTTCCTTCTCTCCTAATN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTCTTCAGTCACATGACTC
TGGCTTTAGAGTCAAGTGTAGAAGGGGTTACTGGGACAATTGATGCTGGT
TGGCTGAAGCTAAGAAATTAGCAGTGATTAAGAAGAGACCAGAATCACTG
AGGTAAAATCGTCTGGGAAATGTTTTCTGAGAGCACAAAGAAGCTGTGTT
CCAGAGATAGACACCATGCTGGCATCTAGACTTGGTAATAATAAGATTCA
CCCAGATGGTACTGGTTTTGAAGGTATGATTTGGGTCATGGAGAACAGCT
GAGGCTTGACACTGTGAAAGGCCATTGTTGAAGGTGCGGCCTCAGATGCA
GTTGACATCCCAGGACTGCAAAGAAGCTGAGGCTTGGCACCATGAAGAGA
GCTTCTGAGAGAATATTTATTGGTGAAGCCTAGTTACAGCAGAAGACCCC
AGTGTGTTGAAAATGGCAATACCATGGGATGATCACCAAGAATAGCAGAA
GCAGTGGTGTGGAGTCCACCAGAGCCTAGAGTGATGTAGAAAGCATAGCT
TGGAGATGTGACCCAAACTCTTTAGTGGAGCTCCGAAAAATCCATGTTGA
TTCCCCACCTTGGAAAATAAATTTTGATCTTTGGAATTGCCTTGTAAATC
CCCTATTGTCACAACTGCCCAACCCTTTTTCTCCTCGTTCTTTATACATT
GTCTTCTTCACTTCTATCTATCCCCCTTTCTAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_f20.b1 MSMg01no468_f20.b1 CHROMAT_FILE:
MSMg01no468_f20.b1 PHD_FILE: MSMg01no468_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:33 2005
         (249 letters)



>mm_chr13_74104195_74104843
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcaggttttctgcttcatcttatgttcattttagtaaggcgtgtttctcatgaaattt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 attcaggttttctgcttcatcttatgttcattttagtaaggtgtgtttctcatgaaattt 260

                                                                       
Query: 61  cttagaatgtctaagaaaatgtcaaatttcttagaataaaattagtcacaatatgtccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 cttagaatgtctaagaaaatgtcaaatttcttagaataaaattagtctcaatatgtccta 320

                                                                       
Query: 121 tgcttttcattttctctctgaaggatacaatttttttggacaggattttctgtatagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttttcattttctctctgaaggatacaatttttttggacaggattttctgtatagccc 380

                                                                       
Query: 181 aatatggctatcaacttgtggtcctccaggctcagcctctcaagtgatagaattaggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatatggctatcaacttgtggtcctccaggctcagcctctcaagtgatagaattaggtgt 440

                    
Query: 241 gtattacat 249
           |||||||||
Sbjct: 441 gtattacat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)