BAC Information

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BAC

Clone NameMSMg01-468I09
Chromosome13 (Build37)
Map Location 62,734,110 - 62,734,264
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503
Downstream geneLOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468I09.T7 (MSMg01no468_i09.b1)MSMg01-468I09.TJ (MSMg01no468_i09.g1)
ACCAG551975AG551976
length829837
length of high quality
(start - end)
155 (130 - 284)195 (132 - 326)
definitionCHROMAT_FILE: MSMg01no468_i09.b1 PHD_FILE: MSMg01no468_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:46 2005CHROMAT_FILE: MSMg01no468_i09.g1 PHD_FILE: MSMg01no468_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGACTCCGCGGA
ANNCCAGGNNTTTTATCTATAAATATTAAATTTTATTTTATATGTATTTT
AATTTTATTTTGCATGCATGTGTTTCCAGAACAGAAGGCAACAGCAAATA
ATTCCCAATAATAGTTAACAGCCAGGTACTTTGGTGAATGGAACCTCTGT
CTACTGTAACAATATCCAGTTTATGTTAACTGCTAGGCTGACTGTCTGAC
AAGGTGCTTATTTAAATTGTACTTTTGCACATGTCAAGTAAAAATATTGC
ATTATTTTCTTCTTCATTTTCTATTTTCTATTTATTCCCAAAAGCGATCC
AATATCTTCTTTGATAATGACGACCCCCAATTCACAAATACATGAAGAAA
ACCTGCTGGTGTGCATTTCCCTTGACTGTGTATTTGATTTTTTTCAGGCA
TGAATATTTTGAATCGTATATTGCTTGAGTAACCTTATCCTTTCCTGTAT
TTATATTTCTTGTCTTATCTTATTAATCTGCTTCTTTGATGCTGTCTCAT
TTTTTCTTTGTGCTTTTTACTTTACCGTTTTACTTCCCCTTTAACATTGT
TCTATATTCTATTTATATATCTTTATTTTTTCTTCCCGAATCTTTCATCT
TTCTTCCCCCTTTCCCGACCATCCTCTTCGCTCTCCTTTCCTTCTCCTCC
CTTCTCTCTTCTTTTCCCTTGTTTATATGTGCGTGCTCGTTTCCCAGTAC
CTATTATCCCTCCATTTTTATTATTGCGCTGTTAACTTCACCAATTTCCT
TTCTTTTTTTCATCATCCCCATTTCCATN
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGACAGTGGACTGTGGTTTCT
GTTTCCCTGTATACAGCAGAACTCCAGGACGGCTTTCTGTCTGTTGGGTC
AGTTACCCTGCATGCCACAGAGACGCCAGGAGGTCTTCAGAAGTTGGTGC
CCAGTTGCCCTGTGTACAGAGGAACCACTGAAGTTCCTTCAAGCTGTGGT
GTCTTCAGGGTATCATACAAGTTGGCTATTGGTTGCTCAGTTGCCCTGTG
AGTAGCAGATCTCCTGGGCTGCCTCATTTCGCTGCTTCAGTTACCCTGAG
AACAGCCAAGAGAGATTTTTGTCACCCCCACCCTAGATCATAGACTATCT
TATGATATAGGTCCTTCTTTTGCCCCTCATTATTTATTAATTATTTGATT
TGTTCCAGGTCGGTCTGTTGCTTTTTCTTTTCCTATTTTTTTTCTTTTCT
CTTCTTATTCTTTTTTTTTTTTTTTTCCATGTTTCCTTTTTTTTCTACCC
TCGTTCTTTTTTTTTTTCCTTTTTCCGTGCCTTTTTCTTTCCTTACCTCC
TCTTTTTTTTTTTTCTTCTTTATTCTCATCTTTTTCTCCTTTCATATCCT
ATTCTCTTTTTTTCATATTCTTTTTCCTTCCTTCCTTCCTTCCTTCCTTT
TTTTATTTTTTTTTCTTCTTCCTTTTCTCTTTTCTTATCCATCTATTTTA
ACTCATCATTCTTCATTCTTCACTACTATTATTTTCCTTTATCTTTTTAT
CTACATCTCCCCTCTTCTCTTTTTCCCTCTTTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_i09.b1 MSMg01no468_i09.b1 CHROMAT_FILE:
MSMg01no468_i09.b1 PHD_FILE: MSMg01no468_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:46 2005
         (155 letters)



>mm_chr13_62733910_62734464
          Length = 555

 Score =  238 bits (123), Expect = 1e-67
 Identities = 147/155 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaaggcaacagcaaataattcccaataatagttaacagccaggtactttggtgaat 60
           ||||||||||||||||||||| ||||||||||||||||| | ||||||| ||||| ||||
Sbjct: 201 aacagaaggcaacagcaaatacttcccaataatagttaataaccaggtagtttggggaat 260

                                                                       
Query: 61  ggaacctctgtctactgtaacaatatccagtttatgttaactgctaggctgactgtctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ggaacctctgtctactgtaacaatatccagtttatgttaactgctaggctgtctgtctga 320

                                              
Query: 121 caaggtgcttatttaaattgtacttttgcacatgt 155
           ||| |||||||||||||||||||||||| ||||||
Sbjct: 321 caatgtgcttatttaaattgtacttttgtacatgt 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)